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The correlated pseudomarginal method

Author

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  • George Deligiannidis
  • Arnaud Doucet
  • Michael K. Pitt

Abstract

The pseudomarginal algorithm is a Metropolis–Hastings‐type scheme which samples asymptotically from a target probability density when we can only estimate unbiasedly an unnormalized version of it. In a Bayesian context, it is a state of the art posterior simulation technique when the likelihood function is intractable but can be estimated unbiasedly by using Monte Carlo samples. However, for the performance of this scheme not to degrade as the number T of data points increases, it is typically necessary for the number N of Monte Carlo samples to be proportional to T to control the relative variance of the likelihood ratio estimator appearing in the acceptance probability of this algorithm. The correlated pseudomarginal method is a modification of the pseudomarginal method using a likelihood ratio estimator computed by using two correlated likelihood estimators. For random‐effects models, we show under regularity conditions that the parameters of this scheme can be selected such that the relative variance of this likelihood ratio estimator is controlled when N increases sublinearly with T and we provide guidelines on how to optimize the algorithm on the basis of a non‐standard weak convergence analysis. The efficiency of computations for Bayesian inference relative to the pseudomarginal method empirically increases with T and exceeds two orders of magnitude in some examples.

Suggested Citation

  • George Deligiannidis & Arnaud Doucet & Michael K. Pitt, 2018. "The correlated pseudomarginal method," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 80(5), pages 839-870, November.
  • Handle: RePEc:bla:jorssb:v:80:y:2018:i:5:p:839-870
    DOI: 10.1111/rssb.12280
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    1. Patrick Leung & Catherine S. Forbes & Gael M Martin & Brendan McCabe, 2019. "Forecasting Observables with Particle Filters: Any Filter Will Do!," Monash Econometrics and Business Statistics Working Papers 22/19, Monash University, Department of Econometrics and Business Statistics.
    2. Dang, Khue-Dung & Quiroz, Matias & Kohn, Robert & Tran, Minh-Ngoc & Villani, Mattias, 2019. "Hamiltonian Monte Carlo with Energy Conserving Subsampling," Working Paper Series 372, Sveriges Riksbank (Central Bank of Sweden).
    3. Matias Quiroz & Mattias Villani & Robert Kohn & Minh-Ngoc Tran & Khue-Dung Dang, 2018. "Subsampling MCMC - an Introduction for the Survey Statistician," Sankhya A: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 80(1), pages 33-69, December.
    4. Gael M. Martin & David T. Frazier & Worapree Maneesoonthorn & Ruben Loaiza-Maya & Florian Huber & Gary Koop & John Maheu & Didier Nibbering & Anastasios Panagiotelis, 2022. "Bayesian Forecasting in Economics and Finance: A Modern Review," Papers 2212.03471, arXiv.org, revised Jul 2023.
    5. Gael M. Martin & David T. Frazier & Ruben Loaiza-Maya & Florian Huber & Gary Koop & John Maheu & Didier Nibbering & Anastasios Panagiotelis, 2023. "Bayesian Forecasting in the 21st Century: A Modern Review," Monash Econometrics and Business Statistics Working Papers 1/23, Monash University, Department of Econometrics and Business Statistics.
    6. Nguyen, Hoang & Virbickaitė, Audronė, 2023. "Modeling stock-oil co-dependence with Dynamic Stochastic MIDAS Copula models," Energy Economics, Elsevier, vol. 124(C).
    7. Duan, Jin-Chuan & Fulop, Andras & Hsieh, Yu-Wei, 2020. "Data-cloning SMC2: A global optimizer for maximum likelihood estimation of latent variable models," Computational Statistics & Data Analysis, Elsevier, vol. 143(C).
    8. Gunawan, David & Dang, Khue-Dung & Quiroz, Matias & Kohn, Robert & Tran, Minh-Ngoc, 2019. "Subsampling Sequential Monte Carlo for Static Bayesian Models," Working Paper Series 371, Sveriges Riksbank (Central Bank of Sweden).
    9. Gael M. Martin & David T. Frazier & Christian P. Robert, 2022. "Computing Bayes: From Then `Til Now," Monash Econometrics and Business Statistics Working Papers 14/22, Monash University, Department of Econometrics and Business Statistics.
    10. Wiqvist, Samuel & Golightly, Andrew & McLean, Ashleigh T. & Picchini, Umberto, 2021. "Efficient inference for stochastic differential equation mixed-effects models using correlated particle pseudo-marginal algorithms," Computational Statistics & Data Analysis, Elsevier, vol. 157(C).
    11. Ajay Jasra & Kody Law & Carina Suciu, 2020. "Advanced Multilevel Monte Carlo Methods," International Statistical Review, International Statistical Institute, vol. 88(3), pages 548-579, December.
    12. Jonathan U Harrison & Ruth E Baker, 2020. "An automatic adaptive method to combine summary statistics in approximate Bayesian computation," PLOS ONE, Public Library of Science, vol. 15(8), pages 1-21, August.
    13. Matti Vihola & Jouni Helske & Jordan Franks, 2020. "Importance sampling type estimators based on approximate marginal Markov chain Monte Carlo," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 47(4), pages 1339-1376, December.
    14. Gael M. Martin & David T. Frazier & Christian P. Robert, 2020. "Computing Bayes: Bayesian Computation from 1763 to the 21st Century," Monash Econometrics and Business Statistics Working Papers 14/20, Monash University, Department of Econometrics and Business Statistics.
    15. Gael M. Martin & David T. Frazier & Christian P. Robert, 2021. "Approximating Bayes in the 21st Century," Monash Econometrics and Business Statistics Working Papers 24/21, Monash University, Department of Econometrics and Business Statistics.
    16. Pratiti Chatterjee & David Gunawan & Robert Kohn, 2020. "The Interaction Between Credit Constraints and Uncertainty Shocks," Papers 2004.14719, arXiv.org.
    17. Golightly, Andrew & Bradley, Emma & Lowe, Tom & Gillespie, Colin S., 2019. "Correlated pseudo-marginal schemes for time-discretised stochastic kinetic models," Computational Statistics & Data Analysis, Elsevier, vol. 136(C), pages 92-107.
    18. Fulop, Andras & Li, Junye, 2019. "Bayesian estimation of dynamic asset pricing models with informative observations," Journal of Econometrics, Elsevier, vol. 209(1), pages 114-138.

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