Landscapes on Spaces of Trees
Combinatorial optimization problems defined on sets of phylogenetic trees are an important issue in computational biology, for instance the problem of reconstruction a phylogeny using maximum likelihood or parsimony approaches. The collection of possible phylogenetic trees is arranged as a so-called Robinson graph by means of the nearest neighborhood interchange move. The coherent algebra and spectra of Robinson graphs are discussed in some detail as their knowledge is important for an understanding of the landscape structure. We consider simple model landscapes as well as landscapes arising from the maximum parsimony problem, focusing on two complementary measures of ruggedness: the amplitude spectrum arising from projecting the cost functions onto the eigenspaces of the underlying graph and the topology of local minima and their connecting saddle points.
To our knowledge, this item is not available for
download. To find whether it is available, there are three
1. Check below under "Related research" whether another version of this item is available online.
2. Check on the provider's web page whether it is in fact available.
3. Perform a search for a similarly titled item that would be available.
|Date of creation:||Jan 2001|
|Date of revision:|
|Contact details of provider:|| Postal: 1399 Hyde Park Road, Santa Fe, New Mexico 87501|
Web page: http://www.santafe.edu/sfi/publications/working-papers.html
More information through EDIRC
Please report citation or reference errors to , or , if you are the registered author of the cited work, log in to your RePEc Author Service profile, click on "citations" and make appropriate adjustments.:
- Fernando F. Feirreira & José F. Fontanari & Peter F. Stadler, 2000. "Landscape Statistics of the Low Autocorrelated Binary String Problem," Working Papers 00-07-033, Santa Fe Institute.
- Wim Hordijk & Peter F. Stadler, 1998. "Amplitude Spectra of Fitness Landscapes," Working Papers 98-02-021, Santa Fe Institute.
When requesting a correction, please mention this item's handle: RePEc:wop:safiwp:01-01-006. See general information about how to correct material in RePEc.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: (Thomas Krichel)
If references are entirely missing, you can add them using this form.