IDEAS home Printed from https://ideas.repec.org/p/cte/wsrepe/46673.html
   My bibliography  Save this paper

Fast k-medoids and q-Fold Fast k-medoids: New distance-based clustering algorithms for large mixed-type data

Author

Listed:
  • Grané Chávez, Aurea
  • Scielzo Ortiz, Fabio

Abstract

In this work new robust efficient clustering algorithms for large datasets of mixedtype data are proposed and implemented in a new Python package called FastKmedoids. Their performance is analyzed through an extensive simulation study, and compared to a wide range of existing clustering alternatives in terms of both predictive power and computational efficiency. MDS is used to visualize clustering results.

Suggested Citation

  • Grané Chávez, Aurea & Scielzo Ortiz, Fabio, 2025. "Fast k-medoids and q-Fold Fast k-medoids: New distance-based clustering algorithms for large mixed-type data," DES - Working Papers. Statistics and Econometrics. WS 46673, Universidad Carlos III de Madrid. Departamento de Estadística.
    • Handle: RePEc:cte:wsrepe:46673
    as

    Download full text from publisher

    File URL: https://e-archivo.uc3m.es/rest/api/core/bitstreams/fcd3b448-af4b-4a56-8d11-c4df23c887ce/content
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Lawrence Hubert & Phipps Arabie, 1985. "Comparing partitions," Journal of Classification, Springer;The Classification Society, vol. 2(1), pages 193-218, December.
    2. Cuadras, C. M. & Fortiana, J., 1995. "A Continuous Metric Scaling Solution for a Random Variable," Journal of Multivariate Analysis, Elsevier, vol. 52(1), pages 1-14, January.
    3. Grané, Aurea & Salini, Silvia & Verdolini, Elena, 2021. "Robust multivariate analysis for mixed-type data: Novel algorithm and its practical application in socio-economic research," Socio-Economic Planning Sciences, Elsevier, vol. 73(C).
    4. Boj, Eva & Grané, Aurea, 2024. "The robustification of distance-based linear models: Some proposals," Socio-Economic Planning Sciences, Elsevier, vol. 95(C).
    5. J. Gower & P. Legendre, 1986. "Metric and Euclidean properties of dissimilarity coefficients," Journal of Classification, Springer;The Classification Society, vol. 3(1), pages 5-48, March.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Douglas L. Steinley & M. J. Brusco, 2019. "Using an Iterative Reallocation Partitioning Algorithm to Verify Test Multidimensionality," Journal of Classification, Springer;The Classification Society, vol. 36(3), pages 397-413, October.
    2. Hennig, Christian, 2008. "Dissolution point and isolation robustness: Robustness criteria for general cluster analysis methods," Journal of Multivariate Analysis, Elsevier, vol. 99(6), pages 1154-1176, July.
    3. Florian Schreiber, 2017. "Identification of customer groups in the German term life market: a benefit segmentation," Annals of Operations Research, Springer, vol. 254(1), pages 365-399, July.
    4. Antonio D’Ambrosio & Sonia Amodio & Carmela Iorio & Giuseppe Pandolfo & Roberta Siciliano, 2021. "Adjusted Concordance Index: an Extensionl of the Adjusted Rand Index to Fuzzy Partitions," Journal of Classification, Springer;The Classification Society, vol. 38(1), pages 112-128, April.
    5. Itziar Irigoien & Concepcion Arenas & Elena Fernández & Francisco Mestres, 2010. "GEVA: geometric variability-based approaches for identifying patterns in data," Computational Statistics, Springer, vol. 25(2), pages 241-255, June.
    6. Phipps Arabie, 1991. "Was euclid an unnecessarily sophisticated psychologist?," Psychometrika, Springer;The Psychometric Society, vol. 56(4), pages 567-587, December.
    7. Ahmed Albatineh & Magdalena Niewiadomska-Bugaj, 2011. "Correcting Jaccard and other similarity indices for chance agreement in cluster analysis," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 5(3), pages 179-200, October.
    8. Jonathon J. O’Brien & Michael T. Lawson & Devin K. Schweppe & Bahjat F. Qaqish, 2020. "Suboptimal Comparison of Partitions," Journal of Classification, Springer;The Classification Society, vol. 37(2), pages 435-461, July.
    9. Hennig, Christian, 2007. "Cluster-wise assessment of cluster stability," Computational Statistics & Data Analysis, Elsevier, vol. 52(1), pages 258-271, September.
    10. Isabella Morlini & Sergio Zani, 2012. "A New Class of Weighted Similarity Indices Using Polytomous Variables," Journal of Classification, Springer;The Classification Society, vol. 29(2), pages 199-226, July.
    11. Miriam Aparicio, 2021. "Resiliency and Cooperation or Regarding Social and Collective Competencies for University Achievement. An Analysis from a Systemic Perspective," European Journal of Social Sciences Education and Research Articles, Revistia Research and Publishing, vol. 8, ejser_v8_.
    12. Yunpeng Zhao & Qing Pan & Chengan Du, 2019. "Logistic regression augmented community detection for network data with application in identifying autism‐related gene pathways," Biometrics, The International Biometric Society, vol. 75(1), pages 222-234, March.
    13. Wu, Han-Ming & Tien, Yin-Jing & Chen, Chun-houh, 2010. "GAP: A graphical environment for matrix visualization and cluster analysis," Computational Statistics & Data Analysis, Elsevier, vol. 54(3), pages 767-778, March.
    14. José E. Chacón, 2021. "Explicit Agreement Extremes for a 2 × 2 Table with Given Marginals," Journal of Classification, Springer;The Classification Society, vol. 38(2), pages 257-263, July.
    15. F. Marta L. Di Lascio & Andrea Menapace & Roberta Pappadà, 2024. "A spatially‐weighted AMH copula‐based dissimilarity measure for clustering variables: An application to urban thermal efficiency," Environmetrics, John Wiley & Sons, Ltd., vol. 35(1), February.
    16. Yifan Zhu & Chongzhi Di & Ying Qing Chen, 2019. "Clustering Functional Data with Application to Electronic Medication Adherence Monitoring in HIV Prevention Trials," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 11(2), pages 238-261, July.
    17. Irene Vrbik & Paul McNicholas, 2015. "Fractionally-Supervised Classification," Journal of Classification, Springer;The Classification Society, vol. 32(3), pages 359-381, October.
    18. Maurizio Vichi & Carlo Cavicchia & Patrick J. F. Groenen, 2022. "Hierarchical Means Clustering," Journal of Classification, Springer;The Classification Society, vol. 39(3), pages 553-577, November.
    19. Guohuan Su & Adam Mertel & Sébastien Brosse & Justin M. Calabrese, 2023. "Species invasiveness and community invasibility of North American freshwater fish fauna revealed via trait-based analysis," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    20. Batool, Fatima & Hennig, Christian, 2021. "Clustering with the Average Silhouette Width," Computational Statistics & Data Analysis, Elsevier, vol. 158(C).

    More about this item

    Keywords

    Clustering;

    NEP fields

    This paper has been announced in the following NEP Reports:

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:cte:wsrepe:46673. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Ana Poveda (email available below). General contact details of provider: http://portal.uc3m.es/portal/page/portal/dpto_estadistica .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.