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A Bayesian Approach to Quantify the Contribution of Animal‐Food Sources to Human Salmonellosis

Author

Listed:
  • Tine Hald
  • David Vose
  • Henrik C. Wegener
  • Timour Koupeev

Abstract

Based on the data from the integrated Danish Salmonella surveillance in 1999, we developed a mathematical model for quantifying the contribution of each of the major animal‐food sources to human salmonellosis. The model was set up to calculate the number of domestic and sporadic cases caused by different Salmonella sero and phage types as a function of the prevalence of these Salmonella types in the animal‐food sources and the amount of food source consumed. A multiparameter prior accounting for the presumed but unknown differences between serotypes and food sources with respect to causing human salmonellosis was also included. The joint posterior distribution was estimated by fitting the model to the reported number of domestic and sporadic cases per Salmonella type in a Bayesian framework using Markov Chain Monte Carlo simulation. The number of domestic and sporadic cases was obtained by subtracting the estimated number of travel‐ and outbreak‐associated cases from the total number of reported cases, i.e., the observed data. The most important food sources were found to be table eggs and domestically produced pork comprising 47.1% (95% credibility interval, CI: 43.3–50.8%) and 9% (95% CI: 7.8–10.4%) of the cases, respectively. Taken together, imported foods were estimated to account for 11.8% (95% CI: 5.0–19.0%) of the cases. Other food sources considered had only a minor impact, whereas 25% of the cases could not be associated with any source. This approach of quantifying the contribution of the various sources to human salmonellosis has proved to be a valuable tool in risk management in Denmark and provides an example of how to integrate quantitative risk assessment and zoonotic disease surveillance.

Suggested Citation

  • Tine Hald & David Vose & Henrik C. Wegener & Timour Koupeev, 2004. "A Bayesian Approach to Quantify the Contribution of Animal‐Food Sources to Human Salmonellosis," Risk Analysis, John Wiley & Sons, vol. 24(1), pages 255-269, February.
  • Handle: RePEc:wly:riskan:v:24:y:2004:i:1:p:255-269
    DOI: 10.1111/j.0272-4332.2004.00427.x
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    1. Hoffman, Sandra & Ashton, Lydia & Todd, Jessica E & Ahn, Jae-Wan & Berck, Peter, 2021. "Attributing U.S. Campylobacteriosis Cases to Food Sources, Season, and Temperature," Economic Research Report 327200, United States Department of Agriculture, Economic Research Service.
    2. Kaatje Els Bollaerts & Winy Messens & Laurent Delhalle & Marc Aerts & Yves Van der Stede & Jeroen Dewulf & Sophie Quoilin & Dominiek Maes & Koen Mintiens & Koen Grijspeerdt, 2009. "Development of a Quantitative Microbial Risk Assessment for Human Salmonellosis Through Household Consumption of Fresh Minced Pork Meat in Belgium," Risk Analysis, John Wiley & Sons, vol. 29(6), pages 820-840, June.
    3. Petra Mullner & Geoff Jones & Alasdair Noble & Simon E. F. Spencer & Steve Hathaway & Nigel Peter French, 2009. "Source Attribution of Food‐Borne Zoonoses in New Zealand: A Modified Hald Model," Risk Analysis, John Wiley & Sons, vol. 29(7), pages 970-984, July.
    4. Leonardo V. de Knegt & Sara M. Pires & Charlotta Löfström & Gitte Sørensen & Karl Pedersen & Mia Torpdahl & Eva M. Nielsen & Tine Hald, 2016. "Application of Molecular Typing Results in Source Attribution Models: The Case of Multiple Locus Variable Number Tandem Repeat Analysis (MLVA) of Salmonella Isolates Obtained from Integrated Surveilla," Risk Analysis, John Wiley & Sons, vol. 36(3), pages 571-588, March.
    5. Antti Mikkelä & Jukka Ranta & Pirkko Tuominen, 2019. "A Modular Bayesian Salmonella Source Attribution Model for Sparse Data," Risk Analysis, John Wiley & Sons, vol. 39(8), pages 1796-1811, August.
    6. Katrina M Groth & Ali Mosleh, 2012. "Deriving causal Bayesian networks from human reliability analysis data: A methodology and example model," Journal of Risk and Reliability, , vol. 226(4), pages 361-379, August.
    7. J. M. David & D. Guillemot & N. Bemrah & A. Thébault & A. Brisabois & M. Chemaly & FX. Weill & P. Sanders & L. Watier, 2013. "The Bayesian Microbial Subtyping Attribution Model: Robustness to Prior Information and a Proposition," Risk Analysis, John Wiley & Sons, vol. 33(3), pages 397-408, March.
    8. repec:jss:jstsof:43:c02 is not listed on IDEAS
    9. Jukka Ranta & Dmitri Matjushin & Terhi Virtanen & Markku Kuusi & Hildegunn Viljugrein & Merete Hofshagen & Marjaana Hakkinen, 2011. "Bayesian Temporal Source Attribution of Foodborne Zoonoses: Campylobacter in Finland and Norway," Risk Analysis, John Wiley & Sons, vol. 31(7), pages 1156-1171, July.
    10. K. Glass & E. Fearnley & H. Hocking & J. Raupach & M. Veitch & L. Ford & M. D. Kirk, 2016. "Bayesian Source Attribution of Salmonellosis in South Australia," Risk Analysis, John Wiley & Sons, vol. 36(3), pages 561-570, March.
    11. Rowena D. Kosmider & Pádraig Nally & Robin R. L. Simons & Adam Brouwer & Susan Cheung & Emma L. Snary & Marion Wooldridge, 2010. "Attribution of Human VTEC O157 Infection from Meat Products: A Quantitative Risk Assessment Approach," Risk Analysis, John Wiley & Sons, vol. 30(5), pages 753-765, May.
    12. Winy Messens & Luis Vivas-Alegre & Saghir Bashir & Giusi Amore & Pablo Romero-Barrios & Marta Hugas, 2013. "Estimating the Public Health Impact of Setting Targets at the European Level for the Reduction of Zoonotic Salmonella in Certain Poultry Populations," IJERPH, MDPI, vol. 10(10), pages 1-15, October.
    13. Marie‐Josée J. Mangen & Michael B. Batz & Annemarie Käsbohrer & Tine Hald & J. Glenn Morris & Michael Taylor & Arie H. Havelaar, 2010. "Integrated Approaches for the Public Health Prioritization of Foodborne and Zoonotic Pathogens," Risk Analysis, John Wiley & Sons, vol. 30(5), pages 782-797, May.
    14. Yangjunna Zhang & Annette M. O'Connor & Chong Wang & James S. Dickson & H. Scott Hurd & Bing Wang, 2019. "Interventions Targeting Deep Tissue Lymph Nodes May Not Effectively Reduce the Risk of Salmonellosis from Ground Pork Consumption: A Quantitative Microbial Risk Assessment," Risk Analysis, John Wiley & Sons, vol. 39(10), pages 2237-2258, October.
    15. Emma L. Snary & Arno N. Swart & Tine Hald, 2016. "Quantitative Microbiological Risk Assessment and Source Attribution for Salmonella: Taking it Further," Risk Analysis, John Wiley & Sons, vol. 36(3), pages 433-436, March.
    16. Michael S. Williams & Eric D. Ebel & David Vose, 2011. "Framework for Microbial Food‐Safety Risk Assessments Amenable to Bayesian Modeling," Risk Analysis, John Wiley & Sons, vol. 31(4), pages 548-565, April.
    17. Hoffmann, Sandra & Ashton, Lydia & Todd, Jessica E. & Ahn, Jae-wan & Berck, Peter, 2021. "Attributing U.S. Campylobacteriosis Cases to Food Sources, Season, and Temperature," USDA Miscellaneous 309620, United States Department of Agriculture.
    18. A. N. Swart & E. G. Evers & R. L. L. Simons & M. Swanenburg, 2016. "Modeling of Salmonella Contamination in the Pig Slaughterhouse," Risk Analysis, John Wiley & Sons, vol. 36(3), pages 498-515, March.
    19. Nanna Munck & Patrick Murigu Kamau Njage & Pimlapas Leekitcharoenphon & Eva Litrup & Tine Hald, 2020. "Application of Whole‐Genome Sequences and Machine Learning in Source Attribution of Salmonella Typhimurium," Risk Analysis, John Wiley & Sons, vol. 40(9), pages 1693-1705, September.
    20. H. Scott Hurd & Claes Enøe & Lene Sørensen & Henrik Wachman & Steven M. Corns & Kenneth M. Bryden & Matthias Grenier, 2008. "Risk‐Based Analysis of the Danish Pork Salmonella Program: Past and Future," Risk Analysis, John Wiley & Sons, vol. 28(2), pages 341-351, April.
    21. Hoffmann, Sandra & Ashton, Lydia & Todd, Jessica E. & Ahn, Jae-Wan & Berck, Peter, 2021. "Attributing U.S. Campylobacteriosis Cases to Food Sources, Season, and Temperature," USDA Miscellaneous 309617, United States Department of Agriculture.

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