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Similarity network aggregation for the analysis of glacier ecosystems

Author

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  • Roberto Ambrosini
  • Federica Baccini
  • Lucio Barabesi

Abstract

The synthesis of information deriving from complex networks is a topic receiving increasing relevance in ecology and environmental sciences. In particular, the aggregation of multilayer networks, that is, network structures formed by multiple interacting networks (the layers), constitutes a fast‐growing field. In several environmental applications, the layers of a multilayer network are modeled as a collection of similarity matrices describing how similar pairs of biological entities are, based on different types of features (e.g., biological traits). The present paper first discusses two main techniques for combining the multi‐layered information into a single network (the so‐called monoplex), that is, similarity network fusion and similarity matrix average (SMA). Then, the effectiveness of the two methods is tested on a real‐world dataset of the relative abundance of microbial species in the ecosystems of nine glaciers (four glaciers in the Alps and five in the Andes). A preliminary clustering analysis on the monoplexes obtained with different methods shows the emergence of a tightly connected community formed by species that are typical of cryoconite holes worldwide. Moreover, the weights assigned to different layers by the SMA algorithm suggest that two large South American glaciers (Exploradores and Perito Moreno) are structurally different from the smaller glaciers in both Europe and South America. Overall, these results highlight the importance of integration methods in the discovery of the underlying organizational structure of biological entities in multilayer ecological networks.

Suggested Citation

  • Roberto Ambrosini & Federica Baccini & Lucio Barabesi, 2025. "Similarity network aggregation for the analysis of glacier ecosystems," Environmetrics, John Wiley & Sons, Ltd., vol. 36(1), January.
  • Handle: RePEc:wly:envmet:v:36:y:2025:i:1:n:e2875
    DOI: 10.1002/env.2875
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    References listed on IDEAS

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    1. Pavel N. Krivitsky & Laura M. Koehly & Christopher Steven Marcum, 2020. "Exponential-Family Random Graph Models for Multi-Layer Networks," Psychometrika, Springer;The Psychometric Society, vol. 85(3), pages 630-659, September.
    2. van Eck, N.J.P. & Waltman, L., 2009. "How to Normalize Co-Occurrence Data? An Analysis of Some Well-Known Similarity Measures," ERIM Report Series Research in Management ERS-2009-001-LIS, Erasmus Research Institute of Management (ERIM), ERIM is the joint research institute of the Rotterdam School of Management, Erasmus University and the Erasmus School of Economics (ESE) at Erasmus University Rotterdam.
    3. P. Robert & Y. Escoufier, 1976. "A Unifying Tool for Linear Multivariate Statistical Methods: The RV‐Coefficient," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 25(3), pages 257-265, November.
    4. P W MacDonald & E Levina & J Zhu, 2022. "Latent space models for multiplex networks with shared structure [Inference for multiple heterogeneous networks with a common invariant subspace]," Biometrika, Biometrika Trust, vol. 109(3), pages 683-706.
    5. Baccini, Federica & Barabesi, Lucio & Baccini, Alberto & Khelfaoui, Mahdi & Gingras, Yves, 2022. "Similarity network fusion for scholarly journals," Journal of Informetrics, Elsevier, vol. 16(1).
    6. Pierre Barbillon & Sophie Donnet & Emmanuel Lazega & Avner Bar-Hen, 2017. "Stochastic block models for multiplex networks: an application to a multilevel network of researchers," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 180(1), pages 295-314, January.
    7. Nees Jan van Eck & Ludo Waltman, 2009. "How to normalize cooccurrence data? An analysis of some well‐known similarity measures," Journal of the American Society for Information Science and Technology, Association for Information Science & Technology, vol. 60(8), pages 1635-1651, August.
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