IDEAS home Printed from https://ideas.repec.org/a/spr/stabio/v15y2023i2d10.1007_s12561-023-09372-y.html
   My bibliography  Save this article

Analysis of the Cox Model with Longitudinal Covariates with Measurement Errors and Partly Interval Censored Failure Times, with Application to an AIDS Clinical Trial

Author

Listed:
  • Yanqing Sun

    (University of North Carolina at Charlotte)

  • Qingning Zhou

    (University of North Carolina at Charlotte)

  • Peter B. Gilbert

    (Fred Hutchinson Cancer Center)

Abstract

Time-dependent covariates are often measured intermittently and with measurement errors. Motivated by the AIDS Clinical Trials Group (ACTG) 175 trial, this paper develops statistical inferences for the Cox model for partly interval censored failure times and longitudinal covariates with measurement errors. The conditional score methods developed for the Cox model with measurement errors and right censored data are no longer applicable to interval censored data. Assuming an additive measurement error model for a longitudinal covariate, we propose a nonparametric maximum likelihood estimation approach by deriving the measurement error induced hazard model that shows the attenuating effect of using the plug-in estimate for the true underlying longitudinal covariate. An EM algorithm is devised to facilitate maximum likelihood estimation that accounts for the partly interval censored failure times. The proposed methods can accommodate different numbers of replicates for different individuals and at different times. Simulation studies show that the proposed methods perform well with satisfactory finite-sample performances and that the naive methods ignoring measurement error or using the plug-in estimate can yield large biases. A hypothesis testing procedure for the measurement error model is proposed. The proposed methods are applied to the ACTG 175 trial to assess the associations of treatment arm and time-dependent CD4 cell count on the composite clinical endpoint of AIDS or death.

Suggested Citation

  • Yanqing Sun & Qingning Zhou & Peter B. Gilbert, 2023. "Analysis of the Cox Model with Longitudinal Covariates with Measurement Errors and Partly Interval Censored Failure Times, with Application to an AIDS Clinical Trial," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 15(2), pages 430-454, July.
  • Handle: RePEc:spr:stabio:v:15:y:2023:i:2:d:10.1007_s12561-023-09372-y
    DOI: 10.1007/s12561-023-09372-y
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s12561-023-09372-y
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s12561-023-09372-y?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Jong S. Kim, 2003. "Maximum likelihood estimation for the proportional hazards model with partly interval‐censored data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 65(2), pages 489-502, May.
    2. Rong Fu & Peter B. Gilbert, 2017. "Joint modeling of longitudinal and survival data with the Cox model and two-phase sampling," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 23(1), pages 136-159, January.
    3. Bates, Douglas & Mächler, Martin & Bolker, Ben & Walker, Steve, 2015. "Fitting Linear Mixed-Effects Models Using lme4," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 67(i01).
    4. Xiao Song & Yijian Huang, 2005. "On Corrected Score Approach for Proportional Hazards Model with Covariate Measurement Error," Biometrics, The International Biometric Society, vol. 61(3), pages 702-714, September.
    5. Donglin Zeng & Lu Mao & D. Y. Lin, 2016. "Maximum likelihood estimation for semiparametric transformation models with interval-censored data," Biometrika, Biometrika Trust, vol. 103(2), pages 253-271.
    6. Chengcheng Hu & D. Y. Lin, 2002. "Cox Regression with Covariate Measurement Error," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 29(4), pages 637-655, December.
    7. Ying Zhang & Lei Hua & Jian Huang, 2010. "A Spline‐Based Semiparametric Maximum Likelihood Estimation Method for the Cox Model with Interval‐Censored Data," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 37(2), pages 338-354, June.
    8. Lianming Wang & Christopher S. McMahan & Michael G. Hudgens & Zaina P. Qureshi, 2016. "A flexible, computationally efficient method for fitting the proportional hazards model to interval-censored data," Biometrics, The International Biometric Society, vol. 72(1), pages 222-231, March.
    9. Kani Chen, 2002. "Semiparametric analysis of transformation models with censored data," Biometrika, Biometrika Trust, vol. 89(3), pages 659-668, August.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Qingning Zhou & Jianwen Cai & Haibo Zhou, 2018. "Outcome†dependent sampling with interval†censored failure time data," Biometrics, The International Biometric Society, vol. 74(1), pages 58-67, March.
    2. Du, Mingyue & Li, Huiqiong & Sun, Jianguo, 2021. "Regression analysis of censored data with nonignorable missing covariates and application to Alzheimer Disease," Computational Statistics & Data Analysis, Elsevier, vol. 157(C).
    3. Ruiwen Zhou & Huiqiong Li & Jianguo Sun & Niansheng Tang, 2022. "A new approach to estimation of the proportional hazards model based on interval-censored data with missing covariates," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 28(3), pages 335-355, July.
    4. Yudong Wang & Zhi‐Sheng Ye & Hongyuan Cao, 2021. "On computation of semiparametric maximum likelihood estimators with shape constraints," Biometrics, The International Biometric Society, vol. 77(1), pages 113-124, March.
    5. Li-Pang Chen & Grace Y. Yi, 2021. "Semiparametric methods for left-truncated and right-censored survival data with covariate measurement error," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 73(3), pages 481-517, June.
    6. Li, Jinqing & Ma, Jun, 2019. "Maximum penalized likelihood estimation of additive hazards models with partly interval censoring," Computational Statistics & Data Analysis, Elsevier, vol. 137(C), pages 170-180.
    7. Donglin Zeng & Fei Gao & D. Y. Lin, 2017. "Maximum likelihood estimation for semiparametric regression models with multivariate interval-censored data," Biometrika, Biometrika Trust, vol. 104(3), pages 505-525.
    8. Lu Mao & Dan-Yu Lin & Donglin Zeng, 2017. "Semiparametric regression analysis of interval-censored competing risks data," Biometrics, The International Biometric Society, vol. 73(3), pages 857-865, September.
    9. Li, Shuwei & Hu, Tao & Zhao, Xingqiu & Sun, Jianguo, 2019. "A class of semiparametric transformation cure models for interval-censored failure time data," Computational Statistics & Data Analysis, Elsevier, vol. 133(C), pages 153-165.
    10. Audrey Boruvka & Richard J. Cook, 2015. "A Cox-Aalen Model for Interval-censored Data," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 42(2), pages 414-426, June.
    11. Xiaoguang Wang & Ziwen Wang, 2021. "EM algorithm for the additive risk mixture cure model with interval-censored data," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 27(1), pages 91-130, January.
    12. Xi Ning & Yinghao Pan & Yanqing Sun & Peter B. Gilbert, 2023. "A semiparametric Cox–Aalen transformation model with censored data," Biometrics, The International Biometric Society, vol. 79(4), pages 3111-3125, December.
    13. Fan Feng & Guanghui Cheng & Jianguo Sun, 2023. "Variable Selection for Length-Biased and Interval-Censored Failure Time Data," Mathematics, MDPI, vol. 11(22), pages 1-20, November.
    14. Pamela A. Shaw & Ross L. Prentice, 2012. "Hazard Ratio Estimation for Biomarker-Calibrated Dietary Exposures," Biometrics, The International Biometric Society, vol. 68(2), pages 397-407, June.
    15. Fei Gao & Kwun Chuen Gary Chan, 2019. "Semiparametric regression analysis of length‐biased interval‐censored data," Biometrics, The International Biometric Society, vol. 75(1), pages 121-132, March.
    16. Yayuan Zhu & Ziqi Chen & Jerald F. Lawless, 2022. "Semiparametric analysis of interval‐censored failure time data with outcome‐dependent observation schemes," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 49(1), pages 236-264, March.
    17. Prabhashi W. Withana Gamage & Monica Chaudari & Christopher S. McMahan & Edwin H. Kim & Michael R. Kosorok, 2020. "An extended proportional hazards model for interval-censored data subject to instantaneous failures," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 26(1), pages 158-182, January.
    18. Chi-Chung Wen, 2010. "Semiparametric maximum likelihood estimation in Cox proportional hazards model with covariate measurement errors," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 72(2), pages 199-217, September.
    19. Shuwei Li & Jianguo Sun & Tian Tian & Xia Cui, 2020. "Semiparametric regression analysis of doubly censored failure time data from cohort studies," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 26(2), pages 315-338, April.
    20. Cheng Zheng & Yiwen Zhang & Ying Huang & Ross Prentice, 2023. "Using Controlled Feeding Study for Biomarker Development in Regression Calibration for Disease Association Estimation," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 15(1), pages 57-113, April.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:stabio:v:15:y:2023:i:2:d:10.1007_s12561-023-09372-y. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.