IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0315740.html
   My bibliography  Save this article

DC algorithm for estimation of sparse Gaussian graphical models

Author

Listed:
  • Tomokaze Shiratori
  • Yuichi Takano

Abstract

Sparse estimation of a Gaussian graphical model (GGM) is an important technique for making relationships between observed variables more interpretable. Various methods have been proposed for sparse GGM estimation, including the graphical lasso that uses the ℓ1 norm regularization term, and other methods that use nonconvex regularization terms. Most of these methods approximate the ℓ0 (pseudo) norm by more tractable functions; however, to estimate more accurate solutions, it is preferable to directly use the ℓ0 norm for counting the number of nonzero elements. To this end, we focus on sparse estimation of GGM with the cardinality constraint based on the ℓ0 norm. Specifically, we convert the cardinality constraint into an equivalent constraint based on the largest-K norm, and reformulate the resultant constrained optimization problem into an unconstrained penalty form with a DC (difference of convex functions) representation. To solve this problem efficiently, we design a DC algorithm in which the graphical lasso algorithm is repeatedly executed to solve convex optimization subproblems. Experimental results using two synthetic datasets show that our method achieves results that are comparable to or better than conventional methods for sparse GGM estimation. Our method is particularly advantageous for selecting true edges when cross-validation is used to determine the number of edges. Moreover, our DC algorithm converges within a practical time frame compared to the graphical lasso.

Suggested Citation

  • Tomokaze Shiratori & Yuichi Takano, 2024. "DC algorithm for estimation of sparse Gaussian graphical models," PLOS ONE, Public Library of Science, vol. 19(12), pages 1-23, December.
  • Handle: RePEc:plo:pone00:0315740
    DOI: 10.1371/journal.pone.0315740
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0315740
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0315740&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0315740?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Peng, Jie & Wang, Pei & Zhou, Nengfeng & Zhu, Ji, 2009. "Partial Correlation Estimation by Joint Sparse Regression Models," Journal of the American Statistical Association, American Statistical Association, vol. 104(486), pages 735-746.
    2. Li‐Pang Chen, 2024. "Estimation of Graphical Models: An Overview of Selected Topics," International Statistical Review, International Statistical Institute, vol. 92(2), pages 194-245, August.
    3. Ming Yuan & Yi Lin, 2007. "Model selection and estimation in the Gaussian graphical model," Biometrika, Biometrika Trust, vol. 94(1), pages 19-35.
    4. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    5. Yanxin Wang & Li Zhu, 2016. "Variable Selection and Parameter Estimation with the Atan Regularization Method," Journal of Probability and Statistics, Hindawi, vol. 2016, pages 1-12, March.
    6. Touloumis, Anestis, 2015. "Nonparametric Stein-type shrinkage covariance matrix estimators in high-dimensional settings," Computational Statistics & Data Analysis, Elsevier, vol. 83(C), pages 251-261.
    7. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
    8. Jianqing Fan & Yuan Liao & Han Liu, 2016. "An overview of the estimation of large covariance and precision matrices," Econometrics Journal, Royal Economic Society, vol. 19(1), pages 1-32, February.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Bailey, Natalia & Pesaran, M. Hashem & Smith, L. Vanessa, 2019. "A multiple testing approach to the regularisation of large sample correlation matrices," Journal of Econometrics, Elsevier, vol. 208(2), pages 507-534.
    2. Lee, Wonyul & Liu, Yufeng, 2012. "Simultaneous multiple response regression and inverse covariance matrix estimation via penalized Gaussian maximum likelihood," Journal of Multivariate Analysis, Elsevier, vol. 111(C), pages 241-255.
    3. Vahe Avagyan & Andrés M. Alonso & Francisco J. Nogales, 2018. "D-trace estimation of a precision matrix using adaptive Lasso penalties," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 12(2), pages 425-447, June.
    4. McGillivray, Annaliza & Khalili, Abbas & Stephens, David A., 2020. "Estimating sparse networks with hubs," Journal of Multivariate Analysis, Elsevier, vol. 179(C).
    5. Lam, Clifford, 2008. "Estimation of large precision matrices through block penalization," LSE Research Online Documents on Economics 31543, London School of Economics and Political Science, LSE Library.
    6. Lu, Huimin & Wang, Yilong & Bing, Heming & Wang, Shuying & Li, Niya, 2025. "Efficient regularized estimation of graphical proportional hazards model with interval-censored data," Computational Statistics & Data Analysis, Elsevier, vol. 209(C).
    7. Lichun Wang & Yuan You & Heng Lian, 2015. "Convergence and sparsity of Lasso and group Lasso in high-dimensional generalized linear models," Statistical Papers, Springer, vol. 56(3), pages 819-828, August.
    8. Pei Wang & Shunjie Chen & Sijia Yang, 2022. "Recent Advances on Penalized Regression Models for Biological Data," Mathematics, MDPI, vol. 10(19), pages 1-24, October.
    9. Lam, Clifford, 2020. "High-dimensional covariance matrix estimation," LSE Research Online Documents on Economics 101667, London School of Economics and Political Science, LSE Library.
    10. Chatterjee, A. & Gupta, S. & Lahiri, S.N., 2015. "On the residual empirical process based on the ALASSO in high dimensions and its functional oracle property," Journal of Econometrics, Elsevier, vol. 186(2), pages 317-324.
    11. Tan, Kean Ming & Witten, Daniela & Shojaie, Ali, 2015. "The cluster graphical lasso for improved estimation of Gaussian graphical models," Computational Statistics & Data Analysis, Elsevier, vol. 85(C), pages 23-36.
    12. Hirose, Kei & Fujisawa, Hironori & Sese, Jun, 2017. "Robust sparse Gaussian graphical modeling," Journal of Multivariate Analysis, Elsevier, vol. 161(C), pages 172-190.
    13. Taha Alshaybawee & Habshah Midi & Rahim Alhamzawi, 2017. "Bayesian elastic net single index quantile regression," Journal of Applied Statistics, Taylor & Francis Journals, vol. 44(5), pages 853-871, April.
    14. Audrino, Francesco & Tetereva, Anastasija, 2019. "Sentiment spillover effects for US and European companies," Journal of Banking & Finance, Elsevier, vol. 106(C), pages 542-567.
    15. Nanshan, Muye & Zhang, Nan & Xun, Xiaolei & Cao, Jiguo, 2022. "Dynamical modeling for non-Gaussian data with high-dimensional sparse ordinary differential equations," Computational Statistics & Data Analysis, Elsevier, vol. 173(C).
    16. Yin, Jianxin & Li, Hongzhe, 2012. "Model selection and estimation in the matrix normal graphical model," Journal of Multivariate Analysis, Elsevier, vol. 107(C), pages 119-140.
    17. Majnu John & Sujit Vettam & Yihren Wu, 2025. "A novel nonconvex, smooth-at-origin penalty for statistical learning," Computational Statistics, Springer, vol. 40(3), pages 1397-1422, March.
    18. Eduardo F. Mendes & Gabriel J. P. Pinto, 2023. "Generalized Information Criteria for Structured Sparse Models," Papers 2309.01764, arXiv.org.
    19. Li, Gaorong & Xue, Liugen & Lian, Heng, 2011. "Semi-varying coefficient models with a diverging number of components," Journal of Multivariate Analysis, Elsevier, vol. 102(7), pages 1166-1174, August.
    20. Vahe Avagyan, 2022. "Precision matrix estimation using penalized Generalized Sylvester matrix equation," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 31(4), pages 950-967, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0315740. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.