IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0204648.html
   My bibliography  Save this article

An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs

Author

Listed:
  • Kouichi Hosomi
  • Mai Fujimoto
  • Kazutaka Ushio
  • Lili Mao
  • Juran Kato
  • Mitsutaka Takada

Abstract

Different computational approaches are employed to efficiently identify novel repositioning possibilities utilizing different sources of information and algorithms. It is critical to propose high-valued candidate-repositioning possibilities before conducting lengthy in vivo validation studies that consume significant resources. Here we report a novel multi-methodological approach to identify opportunities for drug repositioning. We performed analyses of real-world data (RWD) acquired from the United States Food and Drug Administration’s Adverse Event Reporting System (FAERS) and the claims database maintained by the Japan Medical Data Center (JMDC). These analyses were followed by cross-validation through bioinformatics analyses of gene expression data. Inverse associations revealed using disproportionality analysis (DPA) and sequence symmetry analysis (SSA) were used to detect potential drug-repositioning signals. To evaluate the validity of the approach, we conducted a feasibility study to identify marketed drugs with the potential for treating inflammatory bowel disease (IBD). Primary analyses of the FAERS and JMDC claims databases identified psycholeptics such as haloperidol, diazepam, and hydroxyzine as candidates that may improve the treatment of IBD. To further investigate the mechanistic relevance between hit compounds and disease pathology, we conducted bioinformatics analyses of the associations of the gene expression profiles of these compounds with disease. We identified common biological features among genes differentially expressed with or without compound treatment as well as disease-perturbation data available from open sources, which strengthened the mechanistic rationale of our initial findings. We further identified pathways such as cytokine signaling that are influenced by these drugs. These pathways are relevant to pathologies and can serve as alternative targets of therapy. Integrative analysis of RWD such as those available from adverse-event databases, claims databases, and transcriptome analyses represent an effective approach that adds value to efficiently identifying potential novel therapeutic opportunities.

Suggested Citation

  • Kouichi Hosomi & Mai Fujimoto & Kazutaka Ushio & Lili Mao & Juran Kato & Mitsutaka Takada, 2018. "An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs," PLOS ONE, Public Library of Science, vol. 13(10), pages 1-19, October.
  • Handle: RePEc:plo:pone00:0204648
    DOI: 10.1371/journal.pone.0204648
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0204648
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0204648&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0204648?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Christopher Lipinski & Andrew Hopkins, 2004. "Navigating chemical space for biology and medicine," Nature, Nature, vol. 432(7019), pages 855-861, December.
    2. Izyan A. Wahab & Nicole L. Pratt & Lisa Kalisch Ellett & Elizabeth E. Roughead, 2016. "Sequence Symmetry Analysis as a Signal Detection Tool for Potential Heart Failure Adverse Events in an Administrative Claims Database," Drug Safety, Springer, vol. 39(4), pages 347-354, April.
    3. Nicola Nosengo, 2016. "Can you teach old drugs new tricks?," Nature, Nature, vol. 534(7607), pages 314-316, June.
    4. Ruwen Böhm & Leocadie von Hehn & Thomas Herdegen & Hans-Joachim Klein & Oliver Bruhn & Holger Petri & Jan Höcker, 2016. "OpenVigil FDA – Inspection of U.S. American Adverse Drug Events Pharmacovigilance Data and Novel Clinical Applications," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-20, June.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Shin, Hyunjin & Woo, Hyun Goo & Sohn, Kyung-Ah & Lee, Sungjoo, 2023. "Comparing research trends with patenting activities in the biomedical sector: The case of dementia," Technological Forecasting and Social Change, Elsevier, vol. 195(C).
    2. Hua Yu & Jianxin Chen & Xue Xu & Yan Li & Huihui Zhao & Yupeng Fang & Xiuxiu Li & Wei Zhou & Wei Wang & Yonghua Wang, 2012. "A Systematic Prediction of Multiple Drug-Target Interactions from Chemical, Genomic, and Pharmacological Data," PLOS ONE, Public Library of Science, vol. 7(5), pages 1-14, May.
    3. Ansell, Christopher K. & Bartenberger, Martin, 2016. "Varieties of experimentalism," Ecological Economics, Elsevier, vol. 130(C), pages 64-73.
    4. Maja Hellfritzsch & Lotte Rasmussen & Jesper Hallas & Anton Pottegård, 2018. "Using the Symmetry Analysis Design to Screen for Adverse Effects of Non-vitamin K Antagonist Oral Anticoagulants," Drug Safety, Springer, vol. 41(7), pages 685-695, July.
    5. Lee, Won Sang & Han, Eun Jin & Sohn, So Young, 2015. "Predicting the pattern of technology convergence using big-data technology on large-scale triadic patents," Technological Forecasting and Social Change, Elsevier, vol. 100(C), pages 317-329.
    6. Ed Whalen & Manfred Hauben & Andrew Bate, 2018. "Time Series Disturbance Detection for Hypothesis-Free Signal Detection in Longitudinal Observational Databases," Drug Safety, Springer, vol. 41(6), pages 565-577, June.
    7. Thaila Fernanda Reis & Patrícia Alves Castro & Rafael Wesley Bastos & Camila Figueiredo Pinzan & Pedro F. N. Souza & Suzanne Ackloo & Mohammad Anwar Hossain & David Harold Drewry & Sondus Alkhazraji &, 2023. "A host defense peptide mimetic, brilacidin, potentiates caspofungin antifungal activity against human pathogenic fungi," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    8. Clare E. King & Nicole L. Pratt & Nichole Craig & Loc Thai & Margaret Wilson & Neillan Nandapalan & Lisa Kalisch Ellet & Eirene C. Behm, 2020. "Detecting Medicine Safety Signals Using Prescription Sequence Symmetry Analysis of a National Prescribing Data Set," Drug Safety, Springer, vol. 43(8), pages 787-795, August.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0204648. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.