IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v16y2025i1d10.1038_s41467-025-57549-4.html
   My bibliography  Save this article

Design and implementation of aerobic and ambient CO2-reduction as an entry-point for enhanced carbon fixation

Author

Listed:
  • Ari Satanowski

    (Max Planck Institute for Terrestrial Microbiology
    Max Planck Institute of Molecular Plant Physiology)

  • Daniel G. Marchal

    (Max Planck Institute for Terrestrial Microbiology)

  • Alain Perret

    (Université Paris-Saclay)

  • Jean-Louis Petit

    (Université Paris-Saclay)

  • Madeleine Bouzon

    (Université Paris-Saclay)

  • Volker Döring

    (Université Paris-Saclay)

  • Ivan Dubois

    (Université Paris-Saclay)

  • Hai He

    (Max Planck Institute for Terrestrial Microbiology)

  • Edward N. Smith

    (University of Groningen)

  • Virginie Pellouin

    (Université Paris-Saclay)

  • Henrik M. Petri

    (Max Planck Institute for Terrestrial Microbiology)

  • Vittorio Rainaldi

    (Max Planck Institute of Molecular Plant Physiology)

  • Maren Nattermann

    (Max Planck Institute for Terrestrial Microbiology)

  • Simon Burgener

    (Max Planck Institute for Terrestrial Microbiology)

  • Nicole Paczia

    (Max Planck Institute for Terrestrial Microbiology)

  • Jan Zarzycki

    (Max Planck Institute for Terrestrial Microbiology)

  • Matthias Heinemann

    (University of Groningen)

  • Arren Bar-Even

    (Max Planck Institute of Molecular Plant Physiology)

  • Tobias J. Erb

    (Max Planck Institute for Terrestrial Microbiology
    Center for Synthetic Microbiology (SYNMIKRO))

Abstract

The direct reduction of CO2 into one-carbon molecules is key to highly efficient biological CO2-fixation. However, this strategy is currently restricted to anaerobic organisms and low redox potentials. In this study, we introduce the CORE cycle, a synthetic metabolic pathway that converts CO2 to formate at aerobic conditions and ambient CO2 levels, using only NADPH as a reductant. Combining theoretical pathway design and analysis, enzyme bioprospecting and high-throughput screening, modular assembly and adaptive laboratory evolution, we realize the CORE cycle in vivo and demonstrate that the cycle supports growth of E. coli by supplementing C1-metabolism and serine biosynthesis from CO2. We further analyze the theoretical potential of the CORE cycle as a new entry-point for carbon in photorespiration and autotrophy. Overall, our work expands the solution space for biological carbon reduction, offering a promising approach to enhance CO2 fixation processes such as photosynthesis, and opening avenues for synthetic autotrophy.

Suggested Citation

  • Ari Satanowski & Daniel G. Marchal & Alain Perret & Jean-Louis Petit & Madeleine Bouzon & Volker Döring & Ivan Dubois & Hai He & Edward N. Smith & Virginie Pellouin & Henrik M. Petri & Vittorio Rainal, 2025. "Design and implementation of aerobic and ambient CO2-reduction as an entry-point for enhanced carbon fixation," Nature Communications, Nature, vol. 16(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-57549-4
    DOI: 10.1038/s41467-025-57549-4
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-025-57549-4
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-025-57549-4?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Philipp Keller & Michael A. Reiter & Patrick Kiefer & Thomas Gassler & Lucas Hemmerle & Philipp Christen & Elad Noor & Julia A. Vorholt, 2022. "Generation of an Escherichia coli strain growing on methanol via the ribulose monophosphate cycle," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    2. Lydia Steffens & Eugenio Pettinato & Thomas M. Steiner & Achim Mall & Simone König & Wolfgang Eisenreich & Ivan A. Berg, 2021. "High CO2 levels drive the TCA cycle backwards towards autotrophy," Nature, Nature, vol. 592(7856), pages 784-788, April.
    3. Enrico Orsi & Nico J. Claassens & Pablo I. Nikel & Steffen N. Lindner, 2021. "Growth-coupled selection of synthetic modules to accelerate cell factory development," Nature Communications, Nature, vol. 12(1), pages 1-5, December.
    4. Hong Yu & James C. Liao, 2018. "A modified serine cycle in Escherichia coli coverts methanol and CO2 to two-carbon compounds," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Xin Meng & Guipeng Hu & Xiaomin Li & Cong Gao & Wei Song & Wanqing Wei & Jing Wu & Liming Liu, 2025. "A synthetic methylotroph achieves accelerated cell growth by alleviating transcription-replication conflicts," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
    2. Enrico Orsi & Helena Schulz-Mirbach & Charles A. R. Cotton & Ari Satanowski & Henrik M. Petri & Susanne L. Arnold & Natalia Grabarczyk & Rutger Verbakel & Karsten S. Jensen & Stefano Donati & Nicole P, 2025. "Computation-aided designs enable developing auxotrophic metabolic sensors for wide-range glyoxylate and glycolate detection," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
    3. Maren Nattermann & Sebastian Wenk & Pascal Pfister & Hai He & Seung Hwan Lee & Witold Szymanski & Nils Guntermann & Fayin Zhu & Lennart Nickel & Charlotte Wallner & Jan Zarzycki & Nicole Paczia & Nina, 2023. "Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    4. Bernd M. Mitic & Christina Troyer & Lisa Lutz & Michael Baumschabl & Stephan Hann & Diethard Mattanovich, 2023. "The oxygen-tolerant reductive glycine pathway assimilates methanol, formate and CO2 in the yeast Komagataella phaffii," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    5. Adenike Akinsemolu & Helen Onyeaka & Omololu Fagunwa & Adewale Henry Adenuga, 2023. "Toward a Resilient Future: The Promise of Microbial Bioeconomy," Sustainability, MDPI, vol. 15(9), pages 1-13, April.
    6. Yeonhwa Yu & Yongfan Shi & Young Wan Kwon & Yoobin Choi & Yusik Kim & Jeong-Geol Na & June Huh & Jeewon Lee, 2024. "A rationally designed miniature of soluble methane monooxygenase enables rapid and high-yield methanol production in Escherichia coli," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    7. Enrico Orsi & Pablo Ivan Nikel & Lars Keld Nielsen & Stefano Donati, 2023. "Synergistic investigation of natural and synthetic C1-trophic microorganisms to foster a circular carbon economy," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    8. Javier M. Hernández-Sancho & Arnaud Boudigou & Maria V. G. Alván-Vargas & Dekel Freund & Jenny Arnling Bååth & Peter Westh & Kenneth Jensen & Lianet Noda-García & Daniel C. Volke & Pablo I. Nikel, 2024. "A versatile microbial platform as a tunable whole-cell chemical sensor," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    9. Pan, Qin & Tian, Xiaochun & Li, Junpeng & Wu, Xuee & Zhao, Feng, 2021. "Interfacial electron transfer for carbon dioxide valorization in hybrid inorganic-microbial systems," Applied Energy, Elsevier, vol. 292(C).
    10. Enrico Orsi & Lennart Schada von Borzyskowski & Stephan Noack & Pablo I. Nikel & Steffen N. Lindner, 2024. "Automated in vivo enzyme engineering accelerates biocatalyst optimization," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    11. Wang, Kai & Da, Yangyang & Bi, Haoran & Liu, Yanhui & Chen, Biqiang & Wang, Meng & Liu, Zihe & Nielsen, Jens & Tan, Tianwei, 2023. "A one-carbon chemicals conversion strategy to produce precursor of biofuels with Saccharomyces cerevisiae," Renewable Energy, Elsevier, vol. 208(C), pages 331-340.
    12. Cong Zhang & Di-Fei Zhou & Meng-Ying Wang & Ya-Zhen Song & Chong Zhang & Ming-Ming Zhang & Jing Sun & Lu Yao & Xu-Hua Mo & Zeng-Xin Ma & Xiao-Jie Yuan & Yi Shao & Hao-Ran Wang & Si-Han Dong & Kai Bao , 2024. "Phosphoribosylpyrophosphate synthetase as a metabolic valve advances Methylobacterium/Methylorubrum phyllosphere colonization and plant growth," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    13. Tong Wu & Paul A. Gómez-Coronado & Armin Kubis & Steffen N. Lindner & Philippe Marlière & Tobias J. Erb & Arren Bar-Even & Hai He, 2023. "Engineering a synthetic energy-efficient formaldehyde assimilation cycle in Escherichia coli," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    14. Liang-Yu Nieh & Frederic Y.-H. Chen & Hsin-Wei Jung & Kuan-Yu Su & Chao-Yin Tsuei & Chun-Ting Lin & Yue-Qi Lee & James C. Liao, 2024. "Evolutionary engineering of methylotrophic E. coli enables fast growth on methanol," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    15. Simone Bachleitner & Özge Ata & Diethard Mattanovich, 2023. "The potential of CO2-based production cycles in biotechnology to fight the climate crisis," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    16. Swathi Penumutchu & Benjamin J. Korry & Katharine Hewlett & Peter Belenky, 2023. "Fiber supplementation protects from antibiotic-induced gut microbiome dysbiosis by modulating gut redox potential," Nature Communications, Nature, vol. 14(1), pages 1-11, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-57549-4. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.