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Downregulation of transposable elements extends lifespan in Caenorhabditis elegans

Author

Listed:
  • Ádám Sturm

    (Eötvös Loránd University (ELTE)
    Eötvös Loránd Research Network (ELKH)-ELTE Genetics Research Group)

  • Éva Saskői

    (Eötvös Loránd University (ELTE))

  • Bernadette Hotzi

    (Eötvös Loránd University (ELTE))

  • Anna Tarnóci

    (Eötvös Loránd Research Network (ELKH)-ELTE Genetics Research Group)

  • János Barna

    (Eötvös Loránd Research Network (ELKH)-ELTE Genetics Research Group)

  • Ferenc Bodnár

    (Eötvös Loránd University (ELTE))

  • Himani Sharma

    (Eötvös Loránd University (ELTE))

  • Tibor Kovács

    (Eötvös Loránd University (ELTE))

  • Eszter Ari

    (Eötvös Loránd University (ELTE)
    HCEMM-BRC Metabolic Systems Biology Research Group
    Institute of Biochemistry, Biological Research Centre, Eötvös Loránd Research Network (ELKH))

  • Nóra Weinhardt

    (Eötvös Loránd University (ELTE))

  • Csaba Kerepesi

    (Institute for Computer Science and Control (SZTAKI)
    Brigham and Women’s Hospital & Harvard Medical School)

  • András Perczel

    (Eötvös Loránd University)

  • Zoltán Ivics

    (Paul Ehrlich Institute)

  • Tibor Vellai

    (Eötvös Loránd University (ELTE)
    Eötvös Loránd Research Network (ELKH)-ELTE Genetics Research Group
    Vellab Biotech Ltd.)

Abstract

Mobility of transposable elements (TEs) frequently leads to insertional mutations in functional DNA regions. In the potentially immortal germline, TEs are effectively suppressed by the Piwi-piRNA pathway. However, in the genomes of ageing somatic cells lacking the effects of the pathway, TEs become increasingly mobile during the adult lifespan, and their activity is associated with genomic instability. Whether the progressively increasing mobilization of TEs is a cause or a consequence of ageing remains a fundamental problem in biology. Here we show that in the nematode Caenorhabditis elegans, the downregulation of active TE families extends lifespan. Ectopic activation of Piwi proteins in the soma also promotes longevity. Furthermore, DNA N6-adenine methylation at TE stretches gradually rises with age, and this epigenetic modification elevates their transcription as the animal ages. These results indicate that TEs represent a novel genetic determinant of ageing, and that N6-adenine methylation plays a pivotal role in ageing control.

Suggested Citation

  • Ádám Sturm & Éva Saskői & Bernadette Hotzi & Anna Tarnóci & János Barna & Ferenc Bodnár & Himani Sharma & Tibor Kovács & Eszter Ari & Nóra Weinhardt & Csaba Kerepesi & András Perczel & Zoltán Ivics & , 2023. "Downregulation of transposable elements extends lifespan in Caenorhabditis elegans," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40957-9
    DOI: 10.1038/s41467-023-40957-9
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    References listed on IDEAS

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    1. Cynthia J. Kenyon, 2010. "The genetics of ageing," Nature, Nature, vol. 464(7288), pages 504-512, March.
    2. Robert J. Ross & Molly M. Weiner & Haifan Lin, 2014. "PIWI proteins and PIWI-interacting RNAs in the soma," Nature, Nature, vol. 505(7483), pages 353-359, January.
    3. Tao P. Wu & Tao Wang & Matthew G. Seetin & Yongquan Lai & Shijia Zhu & Kaixuan Lin & Yifei Liu & Stephanie D. Byrum & Samuel G. Mackintosh & Mei Zhong & Alan Tackett & Guilin Wang & Lawrence S. Hon & , 2016. "DNA methylation on N6-adenine in mammalian embryonic stem cells," Nature, Nature, vol. 532(7599), pages 329-333, April.
    4. Linhua Sun & Yuqing Jing & Xinyu Liu & Qi Li & Zhihui Xue & Zhukuan Cheng & Daowen Wang & Hang He & Weiqiang Qian, 2020. "Heat stress-induced transposon activation correlates with 3D chromatin organization rearrangement in Arabidopsis," Nature Communications, Nature, vol. 11(1), pages 1-13, December.
    5. Vera Gorbunova & Andrei Seluanov & Paolo Mita & Wilson McKerrow & David Fenyö & Jef D. Boeke & Sara B. Linker & Fred H. Gage & Jill A. Kreiling & Anna P. Petrashen & Trenton A. Woodham & Jackson R. Ta, 2021. "The role of retrotransposable elements in ageing and age-associated diseases," Nature, Nature, vol. 596(7870), pages 43-53, August.
    6. Mohamed A. El-Brolosy & Zacharias Kontarakis & Andrea Rossi & Carsten Kuenne & Stefan Günther & Nana Fukuda & Khrievono Kikhi & Giulia L. M. Boezio & Carter M. Takacs & Shih-Lei Lai & Ryuichi Fukuda &, 2019. "Genetic compensation triggered by mutant mRNA degradation," Nature, Nature, vol. 568(7751), pages 193-197, April.
    7. Tibor Vellai, 2021. "How the amino acid leucine activates the key cell-growth regulator mTOR," Nature, Nature, vol. 596(7871), pages 192-194, August.
    8. Bing Yao & Ying Cheng & Zhiqin Wang & Yujing Li & Li Chen & Luoxiu Huang & Wenxin Zhang & Dahua Chen & Hao Wu & Beisha Tang & Peng Jin, 2017. "DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
    9. Michael Van Meter & Mehr Kashyap & Sarallah Rezazadeh & Anthony J. Geneva & Timothy D. Morello & Andrei Seluanov & Vera Gorbunova, 2014. "SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age," Nature Communications, Nature, vol. 5(1), pages 1-10, December.
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