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On the predictability of infectious disease outbreaks

Author

Listed:
  • Samuel V. Scarpino

    (Northeastern University
    Northeastern University
    Northeastern University
    Northeastern University)

  • Giovanni Petri

    (ISI Foundation
    ISI Global Science Foundation)

Abstract

Infectious disease outbreaks recapitulate biology: they emerge from the multi-level interaction of hosts, pathogens, and environment. Therefore, outbreak forecasting requires an integrative approach to modeling. While specific components of outbreaks are predictable, it remains unclear whether fundamental limits to outbreak prediction exist. Here, adopting permutation entropy as a model independent measure of predictability, we study the predictability of a diverse collection of outbreaks and identify a fundamental entropy barrier for disease time series forecasting. However, this barrier is often beyond the time scale of single outbreaks, implying prediction is likely to succeed. We show that forecast horizons vary by disease and that both shifting model structures and social network heterogeneity are likely mechanisms for differences in predictability. Our results highlight the importance of embracing dynamic modeling approaches, suggest challenges for performing model selection across long time series, and may relate more broadly to the predictability of complex adaptive systems.

Suggested Citation

  • Samuel V. Scarpino & Giovanni Petri, 2019. "On the predictability of infectious disease outbreaks," Nature Communications, Nature, vol. 10(1), pages 1-8, December.
  • Handle: RePEc:nat:natcom:v:10:y:2019:i:1:d:10.1038_s41467-019-08616-0
    DOI: 10.1038/s41467-019-08616-0
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    Cited by:

    1. Gabrick, Enrique C. & Sayari, Elaheh & Protachevicz, Paulo R. & Szezech, José D. & Iarosz, Kelly C. & de Souza, Silvio L.T. & Almeida, Alexandre C.L. & Viana, Ricardo L. & Caldas, Iberê L. & Batista, , 2023. "Unpredictability in seasonal infectious diseases spread," Chaos, Solitons & Fractals, Elsevier, vol. 166(C).
    2. Yulan Li & Kun Ma, 2022. "A Hybrid Model Based on Improved Transformer and Graph Convolutional Network for COVID-19 Forecasting," IJERPH, MDPI, vol. 19(19), pages 1-17, September.
    3. Muhammad Umar Farooq & Amjad Hussain & Tariq Masood & Muhammad Salman Habib, 2021. "Supply Chain Operations Management in Pandemics: A State-of-the-Art Review Inspired by COVID-19," Sustainability, MDPI, vol. 13(5), pages 1-33, February.
    4. Doina Bucur & Petter Holme, 2020. "Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities," PLOS Computational Biology, Public Library of Science, vol. 16(7), pages 1-20, July.
    5. Cooper, Ian & Mondal, Argha & Antonopoulos, Chris G., 2020. "Dynamic tracking with model-based forecasting for the spread of the COVID-19 pandemic," Chaos, Solitons & Fractals, Elsevier, vol. 139(C).
    6. Cooper, Ian & Mondal, Argha & Antonopoulos, Chris G., 2020. "A SIR model assumption for the spread of COVID-19 in different communities," Chaos, Solitons & Fractals, Elsevier, vol. 139(C).
    7. Samuel V Scarpino & James G Scott & Rosalind M Eggo & Bruce Clements & Nedialko B Dimitrov & Lauren Ancel Meyers, 2020. "Socioeconomic bias in influenza surveillance," PLOS Computational Biology, Public Library of Science, vol. 16(7), pages 1-19, July.
    8. Yulan Li & Yang Wang & Kun Ma, 2022. "Integrating Transformer and GCN for COVID-19 Forecasting," Sustainability, MDPI, vol. 14(16), pages 1-15, August.
    9. Rodney P Jones, 2020. "Would the United States Have Had Too Few Beds for Universal Emergency Care in the Event of a More Widespread Covid-19 Epidemic?," IJERPH, MDPI, vol. 17(14), pages 1-14, July.
    10. Martins, Adriel M.F. & Fernandes, Leonardo H.S. & Nascimento, Abraão D.C., 2023. "Scientific progress in information theory quantifiers," Chaos, Solitons & Fractals, Elsevier, vol. 170(C).
    11. Mark M. Dekker & Rolf N. Lieshout & Robin C. Ball & Paul C. Bouman & Stefan C. Dekker & Henk A. Dijkstra & Rob M. P. Goverde & Dennis Huisman & Debabrata Panja & Alfons A. M. Schaafsma & Marjan Akker, 2022. "A next step in disruption management: combining operations research and complexity science," Public Transport, Springer, vol. 14(1), pages 5-26, March.
    12. Gergo Pinter & Imre Felde & Amir Mosavi & Pedram Ghamisi & Richard Gloaguen, 2020. "COVID-19 Pandemic Prediction for Hungary; A Hybrid Machine Learning Approach," Mathematics, MDPI, vol. 8(6), pages 1-20, June.

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