IDEAS home Printed from https://ideas.repec.org/a/gam/jagris/v12y2022i11p1815-d959107.html
   My bibliography  Save this article

Pyramiding Submergence Tolerance and Three Bacterial Blight Resistance Genes in Popular Rice Variety Hasanta through Marker-Assisted Backcross Breeding

Author

Listed:
  • Goutam Das

    (Department of Plant Breeding and Genetics, Odisha Agricultural University and Technology, Bhubaneshwar 751003, India)

  • Banshidhar Pradhan

    (Department of Plant Breeding and Genetics, Odisha Agricultural University and Technology, Bhubaneshwar 751003, India)

  • Debendranath Bastia

    (Department of Plant Breeding and Genetics, Odisha Agricultural University and Technology, Bhubaneshwar 751003, India)

  • Sanghamitra Samantaray

    (ICAR-National Rice Research Institute, Cuttack 753006, India)

  • Debarchana Jena

    (ICAR-National Rice Research Institute, Cuttack 753006, India)

  • Diptibala Rout

    (ICAR-National Rice Research Institute, Cuttack 753006, India)

  • Paduranga Bhagwan Arsode

    (ICAR-National Rice Research Institute, Cuttack 753006, India)

  • Vineeta Singh

    (ICAR-National Rice Research Institute, Cuttack 753006, India)

  • Arup Kumar Mukherjee

    (ICAR-National Rice Research Institute, Cuttack 753006, India)

  • Chander Mohan

    (Department of Agriculture, Cooperation and Farmers Welfare, New Delhi-110001, India)

  • Ramlakhan Verma

    (ICAR-National Rice Research Institute, Cuttack 753006, India)

Abstract

Flash flooding (FF) along with bacterial blight (BB) outbreak are very destructive for rice production in the rainfed shallow-lowland (RSL) ecosystem. The presence of dynamic Xoo races with varying levels of genetic diversity and virulence renders their management extremely challenging under RSL. In this context, the marker-assisted improvement of plant resistance/tolerance has been proven as one of the most promising strategies towards the development of sustainable cultivars. The present study demonstrates the marker-assisted introgression of the submergence tolerant ( Sub1 ) and three bacterial blight resistant genes ( Xa21 + xa13 + xa5 ) into the genetic background of Hasanta, a long duration popular rice variety in the eastern coastal region of India. The rice genotypes, Swarna Sub1 (carrying Sub1 ) and IRBB66 (carrying Xa21 + xa13 + Xa7 + xa5 + Xa4 ) had maximum genetic similarity (0.84 and 0.73, respectively) with Hasanta; recurrent parent (RP) was used as donor. The forward analysis of target genes in F1s, IC1F1s and backcross (BC) generations was performed by linked/genic markers (Sub1bc2; pTA248, xa13prom and RM122), whereas background recovery of RP in each BC and segregating generations was performed utilizing 108 hypervariable SSR markers. Intervened speed breeding (SB) strategy and intensive phenotyping could lead the development of near isogenic lines (NILs) as to the RP in all basic traits. The performance of the near isogenic lines (NILs, BC 2 F 3 and BC 2 F 4 ), HS 232-411-391-756-37, HS 232-411-391-809-8, HS 232-411-391-756-18, HS 110-224-197-10-36, HS 232-411-391-809-81, HS 110-224-197-10-41 and HS 232-411-391-809-63 establishes the utility of marker-assisted backcross-breeding (MAB) and SB in accelerated trait introgression. The introgressed lines carrying Sub1 + Xa21 + xa13 + xa5 showed 76% to 91% survival under 14 days of submergence and durable BB resistance (percent disease index-PDI of 2.68 ± 0.26 to 6.22 ± 1.08 and lesion length, LL of 1.29 ± 0.12 to 4.2 ± 0.64 cm). Physiological analysis revealed that improved NILs, carrying Sub1 gene conquered adaptive physiological modulations, had reduced the consumption of soluble sugar and the degradation of total chlorophyll contents (TCC), and an enhanced level of Alcohol Dehydrogenase activity (ADH) and proline accumulation in all submergence regimes. The pyramided lines attained complete product profile of RP, that will contribute to sustainable rice production under RSL, particularly in the coastal region that has substantial acreage under the variety Hasanta.

Suggested Citation

  • Goutam Das & Banshidhar Pradhan & Debendranath Bastia & Sanghamitra Samantaray & Debarchana Jena & Diptibala Rout & Paduranga Bhagwan Arsode & Vineeta Singh & Arup Kumar Mukherjee & Chander Mohan & Ra, 2022. "Pyramiding Submergence Tolerance and Three Bacterial Blight Resistance Genes in Popular Rice Variety Hasanta through Marker-Assisted Backcross Breeding," Agriculture, MDPI, vol. 12(11), pages 1-26, October.
    • Handle: RePEc:gam:jagris:v:12:y:2022:i:11:p:1815-:d:959107
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/2077-0472/12/11/1815/pdf
    Download Restriction: no
    File URL: https://www.mdpi.com/2077-0472/12/11/1815/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Kenong Xu & Xia Xu & Takeshi Fukao & Patrick Canlas & Reycel Maghirang-Rodriguez & Sigrid Heuer & Abdelbagi M. Ismail & Julia Bailey-Serres & Pamela C. Ronald & David J. Mackill, 2006. "Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice," Nature, Nature, vol. 442(7103), pages 705-708, August.
    2. Kartik Chandra Pradhan & Soumya Ranjan Barik & Shibani Mohapatra & Deepak Kumar Nayak & Elssa Pandit & Binod Kumar Jena & Sushree Sangeeta & Abhijit Pradhan & Abhishek Samal & Jitendiya Meher & Lambod, 2022. "Incorporation of Two Bacterial Blight Resistance Genes into the Popular Rice Variety, Ranidhan through Marker-Assisted Breeding," Agriculture, MDPI, vol. 12(9), pages 1-14, August.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Hifzur RAHMAN & Vijayalakshmi DAKSHINAMURTHI & Sasikala RAMASAMY & Sudha MANICKAM & Ashok Kumar KALIYAPERUMAL & Suchismita RAHA & Naresh PANNEERSELVAM & Valarmathi RAMANATHAN & Jagadeeshselvam NALLATH, 2018. "Introgression of submergence tolerance into CO 43, a popular rice variety of India, through marker-assisted backcross breeding," Czech Journal of Genetics and Plant Breeding, Czech Academy of Agricultural Sciences, vol. 54(3), pages 101-108.
    2. Mariola Staniak & Ewa Szpunar-Krok & Anna Kocira, 2023. "Responses of Soybean to Selected Abiotic Stresses—Photoperiod, Temperature and Water," Agriculture, MDPI, vol. 13(1), pages 1-28, January.
    3. Taikui Zhang & Weichen Huang & Lin Zhang & De-Zhu Li & Ji Qi & Hong Ma, 2024. "Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages," Nature Communications, Nature, vol. 15(1), pages 1-27, December.
    4. Kyle Emerick & Alain de Janvry & Elisabeth Sadoulet & Manzoor H. Dar, 2016. "Technological Innovations, Downside Risk, and the Modernization of Agriculture," American Economic Review, American Economic Association, vol. 106(6), pages 1537-1561, June.
    5. Emerick, Kyle, 2018. "Trading frictions in Indian village economies," Journal of Development Economics, Elsevier, vol. 132(C), pages 32-56.
    6. Emerick, Kyle & De Janvry, Alain & Sadoulet, Elisabeth & Dar, Manzoor & Wiseman, Eleanor, 2020. "Private Input Suppliers as Information Agents for Technology Adoption in Agriculture," CEPR Discussion Papers 15584, C.E.P.R. Discussion Papers.
    7. Daiqi Wang & Hongru Wang & Xiaomei Xu & Man Wang & Yahuan Wang & Hong Chen & Fei Ping & Huanhuan Zhong & Zhengkun Mu & Wantong Xie & Xiangyu Li & Jingbin Feng & Milan Zhang & Zhilan Fan & Tifeng Yang , 2023. "Two complementary genes in a presence-absence variation contribute to indica-japonica reproductive isolation in rice," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    8. Xuelin Xie & Jingfang Shen, 2021. "Waterlogging Resistance Evaluation Index and Photosynthesis Characteristics Selection: Using Machine Learning Methods to Judge Poplar’s Waterlogging Resistance," Mathematics, MDPI, vol. 9(13), pages 1-19, July.
    9. Yusuff Oladosu & Mohd Y. Rafii & Fatai Arolu & Samuel Chibuike Chukwu & Ismaila Muhammad & Isiaka Kareem & Monsuru Adekunle Salisu & Ibrahim Wasiu Arolu, 2020. "Submergence Tolerance in Rice: Review of Mechanism, Breeding and, Future Prospects," Sustainability, MDPI, vol. 12(4), pages 1-16, February.
    10. Abdul Rehman & Luan Jingdong & Abbas Ali Chandio & Muhammad Shabbir & Imran Hussain, 2017. "Economic outlook of rice crops in Pakistan: a time series analysis (1970–2015)," Financial Innovation, Springer;Southwestern University of Finance and Economics, vol. 3(1), pages 1-9, December.
    11. Isnaini Isnaini & Yudhistira Nugraha & Niranjan Baisakh & Nono Carsono, 2023. "Toward Food Security in 2050: Gene Pyramiding for Climate-Smart Rice," Sustainability, MDPI, vol. 15(19), pages 1-35, September.
    12. Arinal Haq Izzawati Nurrahma & Shin Yabuta & Ahmad Junaedi & Jun-Ichi Sakagami, 2021. "Analysis of Non-Structural Carbohydrate in Relation with Shoot Elongation of Rice under Complete Submergence," Sustainability, MDPI, vol. 13(2), pages 1-11, January.
    13. Hongbo Li & Shenhao Wang & Sen Chai & Zhiquan Yang & Qiqi Zhang & Hongjia Xin & Yuanchao Xu & Shengnan Lin & Xinxiu Chen & Zhiwang Yao & Qingyong Yang & Zhangjun Fei & Sanwen Huang & Zhonghua Zhang, 2022. "Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    14. Jian Sun & Guangchen Zhang & Zhibo Cui & Ximan Kong & Xiaoyu Yu & Rui Gui & Yuqing Han & Zhuan Li & Hong Lang & Yuchen Hua & Xuemin Zhang & Quan Xu & Liang Tang & Zhengjin Xu & Dianrong Ma & Wenfu Che, 2022. "Regain flood adaptation in rice through a 14-3-3 protein OsGF14h," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    15. Yongqi He & Shan Sun & Jia Zhao & Zhibo Huang & Liling Peng & Chengwei Huang & Zhengbin Tang & Qianqian Huang & Zhoufei Wang, 2023. "UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    16. Agata Zubrycka & Charlene Dambire & Laura Dalle Carbonare & Gunjan Sharma & Tinne Boeckx & Kamal Swarup & Craig J. Sturrock & Brian S. Atkinson & Ranjan Swarup & Françoise Corbineau & Neil J. Oldham &, 2023. "ERFVII action and modulation through oxygen-sensing in Arabidopsis thaliana," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    17. Michalak Dorota & Wulf Erico, 2019. "Priority Areas of Poland’s Development in Line with EU Policy (Smart Specializations) – Poland’s Food Security and Climate Change," Journal of Intercultural Management, Sciendo, vol. 11(4), pages 158-182, December.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jagris:v:12:y:2022:i:11:p:1815-:d:959107. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.