IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v349y2017icp76-85.html
   My bibliography  Save this article

Should topographic metrics be considered when predicting species density of birds on a large geographical scale? A case of Random Forest approach

Author

Listed:
  • Kosicki, Jakub Z.

Abstract

Species Distribution Modelling (SDM) is a group of statistical tools that describe species distribution in environmental gradients in order to create their predictive distribution. However, due to the complexity of factors that influence the occurrence or density of species these methods’ effectiveness is still debatable. That is why we decided to explore how topographic metrics, such as altitude, slope, roughness and aspect, would affect the density of farmland (Icterine warbler) and forest (Eurasian golden oriole) bird species. We generated two sets of SDMs for each of the two bird species: One set of models contained topographic metrics as a predictor variable, and the other did not. Out-of-back procedures in the Random Forest approach and evaluation models based on independent dataset scores showed that omitting topographic metrics as predictors resulted in a substantial reduction of model performance for both lowland and upland bird species. Further analysis of predictive maps revealed that neglecting topographic metrics resulted in large over-predictions of species’ densities in regions where these species were rare. Importantly, our results also support the notion that detailed topographic metrics can be considered as a surrogate for elusive climatic factors and the habitat’s condition. Hence, the study emphasises that the process of selecting predictor variables, especially topographic metrics, is one of key elements in developing Species Distribution Models for birds, even for those species which are not directly dependant on the topographic metrics.

Suggested Citation

  • Kosicki, Jakub Z., 2017. "Should topographic metrics be considered when predicting species density of birds on a large geographical scale? A case of Random Forest approach," Ecological Modelling, Elsevier, vol. 349(C), pages 76-85.
  • Handle: RePEc:eee:ecomod:v:349:y:2017:i:c:p:76-85
    DOI: 10.1016/j.ecolmodel.2017.01.024
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380016306755
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2017.01.024?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Hof, Anouschka R. & Jansson, Roland & Nilsson, Christer, 2012. "The usefulness of elevation as a predictor variable in species distribution modelling," Ecological Modelling, Elsevier, vol. 246(C), pages 86-90.
    2. Robert M. Dorazio, 2012. "Predicting the Geographic Distribution of a Species from Presence-Only Data Subject to Detection Errors," Biometrics, The International Biometric Society, vol. 68(4), pages 1303-1312, December.
    3. Oke, Oluwatobi A. & Thompson, Ken A., 2015. "Distribution models for mountain plant species: The value of elevation," Ecological Modelling, Elsevier, vol. 301(C), pages 72-77.
    4. Vincenzi, Simone & Zucchetta, Matteo & Franzoi, Piero & Pellizzato, Michele & Pranovi, Fabio & De Leo, Giulio A. & Torricelli, Patrizia, 2011. "Application of a Random Forest algorithm to predict spatial distribution of the potential yield of Ruditapes philippinarum in the Venice lagoon, Italy," Ecological Modelling, Elsevier, vol. 222(8), pages 1471-1478.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Kosicki, Jakub Z., 2022. "Niche segregation on the landscape scale of two co-existing related congeners in the sympatric zone – modelling approach," Ecological Modelling, Elsevier, vol. 468(C).

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Wiltshire, Kathryn H & Tanner, Jason E, 2020. "Comparing maximum entropy modelling methods to inform aquaculture site selection for novel seaweed species," Ecological Modelling, Elsevier, vol. 429(C).
    2. Meineri, Eric & Dahlberg, C. Johan & Hylander, Kristoffer, 2015. "Using Gaussian Bayesian Networks to disentangle direct and indirect associations between landscape physiography, environmental variables and species distribution," Ecological Modelling, Elsevier, vol. 313(C), pages 127-136.
    3. Fernández, Daniel & Nakamura, Miguel, 2015. "Estimation of spatial sampling effort based on presence-only data and accessibility," Ecological Modelling, Elsevier, vol. 299(C), pages 147-155.
    4. Oke, Oluwatobi A. & Thompson, Ken A., 2015. "Distribution models for mountain plant species: The value of elevation," Ecological Modelling, Elsevier, vol. 301(C), pages 72-77.
    5. Dandan Zhao & Hong S. He & Wen J. Wang & Lei Wang & Haibo Du & Kai Liu & Shengwei Zong, 2018. "Predicting Wetland Distribution Changes under Climate Change and Human Activities in a Mid- and High-Latitude Region," Sustainability, MDPI, vol. 10(3), pages 1-14, March.
    6. Jig Han Jeong & Jonathan P Resop & Nathaniel D Mueller & David H Fleisher & Kyungdahm Yun & Ethan E Butler & Dennis J Timlin & Kyo-Moon Shim & James S Gerber & Vangimalla R Reddy & Soo-Hyung Kim, 2016. "Random Forests for Global and Regional Crop Yield Predictions," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-15, June.
    7. So Young Woo & Chung Gil Jung & Ji Wan Lee & Seong Joon Kim, 2019. "Evaluation of Watershed Scale Aquatic Ecosystem Health by SWAT Modeling and Random Forest Technique," Sustainability, MDPI, vol. 11(12), pages 1-15, June.
    8. V. Kohestani & M. Hassanlourad & A. Ardakani, 2015. "Evaluation of liquefaction potential based on CPT data using random forest," Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, Springer;International Society for the Prevention and Mitigation of Natural Hazards, vol. 79(2), pages 1079-1089, November.
    9. das Neves, Patricia Bittencourt Tavares & Blanco, Claudio José Cavalcante & Montenegro Duarte, André Augusto Azevedo & das Neves, Filipe Bittencourt Souza & das Neves, Isabela Bittencourt Souza & de P, 2021. "Amazon rainforest deforestation influenced by clandestine and regular roadway network," Land Use Policy, Elsevier, vol. 108(C).
    10. Grimmett, Liam & Whitsed, Rachel & Horta, Ana, 2020. "Presence-only species distribution models are sensitive to sample prevalence: Evaluating models using spatial prediction stability and accuracy metrics," Ecological Modelling, Elsevier, vol. 431(C).
    11. Kenneth F Kellner & Robert K Swihart, 2014. "Accounting for Imperfect Detection in Ecology: A Quantitative Review," PLOS ONE, Public Library of Science, vol. 9(10), pages 1-8, October.
    12. Sangui Yi & Jihua Zhou & Liming Lai & Qinglin Sun & Xin Liu & Benben Liu & Jiaojiao Guo & Yuanrun Zheng, 2021. "Different Causal Factors Occur between Land Use/Cover and Vegetation Classification Systems but Not between Vegetation Classification Levels in the Highly Disturbed Jing-Jin-Ji Region of China," Sustainability, MDPI, vol. 13(8), pages 1-23, April.
    13. Netrananda Sahu & Pritiranjan Das & Atul Saini & Ayush Varun & Suraj Kumar Mallick & Rajiv Nayan & S. P. Aggarwal & Balaram Pani & Ravi Kesharwani & Anil Kumar, 2023. "Analysis of Tea Plantation Suitability Using Geostatistical and Machine Learning Techniques: A Case of Darjeeling Himalaya, India," Sustainability, MDPI, vol. 15(13), pages 1-21, June.
    14. Ji-Zhong Wan & Chun-Jing Wang & Fei-Hai Yu, 2017. "Spatial conservation prioritization for dominant tree species of Chinese forest communities under climate change," Climatic Change, Springer, vol. 144(2), pages 303-316, September.
    15. Rai, Anu & Bashir, Tawqir & Lagunes – Díaz, Elio Guarionex & Shrestha, Bibek, 2023. "Modeling Ganges river dolphin distribution and prioritizing areas for efficient conservation planning- a range-wide assessment," Ecological Modelling, Elsevier, vol. 481(C).
    16. Dandan Zhao & Hong S. He & Wen J. Wang & Jiping Liu & Haibo Du & Miaomiao Wu & Xinyuan Tan, 2018. "Distribution and Driving Factors of Forest Swamp Conversions in a Cold Temperate Region," IJERPH, MDPI, vol. 15(10), pages 1-14, September.
    17. Ewa Wilk & Małgorzata Krówczyńska & Bogdan Zagajewski, 2019. "Modelling the Spatial Distribution of Asbestos—Cement Products in Poland with the Use of the Random Forest Algorithm," Sustainability, MDPI, vol. 11(16), pages 1-13, August.
    18. L. Lombardo & G. Fubelli & G. Amato & M. Bonasera, 2016. "Presence-only approach to assess landslide triggering-thickness susceptibility: a test for the Mili catchment (north-eastern Sicily, Italy)," Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, Springer;International Society for the Prevention and Mitigation of Natural Hazards, vol. 84(1), pages 565-588, October.
    19. Fukuda, Shinji & Spreer, Wolfram & Yasunaga, Eriko & Yuge, Kozue & Sardsud, Vicha & Müller, Joachim, 2013. "Random Forests modelling for the estimation of mango (Mangifera indica L. cv. Chok Anan) fruit yields under different irrigation regimes," Agricultural Water Management, Elsevier, vol. 116(C), pages 142-150.
    20. Kim, Seokmin & Koop, Anthony & Fowler, Glenn & Israel, Kimberly & Takeuchi, Yu & Lieurance, Deah, 2023. "Addition of finer scale data and uncertainty analysis increases precision of geospatial suitability model for non-native plants in the US," Ecological Modelling, Elsevier, vol. 484(C).

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:349:y:2017:i:c:p:76-85. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.