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Statistical Inference for Variable Importance

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  • van der Laan Mark J.

    (Division of Biostatistics, School of Public Health, University of California, Berkeley)

Abstract

Many statistical problems involve the learning of an importance/effect of a variable for predicting an outcome of interest based on observing a sample of $n$ independent and identically distributed observations on a list of input variables and an outcome. For example, though prediction/machine learning is, in principle, concerned with learning the optimal unknown mapping from input variables to an outcome from the data, the typical reported output is a list of importance measures for each input variable. The approach in prediction has been to learn the unknown optimal predictor from the data and derive, for each of the input variables, the variable importance from the obtained fit. In this article we propose a new approach which involves for each variable separately 1) defining variable importance as a real valued parameter, 2) deriving the efficient influence curve and thereby optimal estimating function for this parameter in the assumed (possibly nonparametric) model, and 3) develop a corresponding double robust locally efficient estimator of this variable importance, obtained by substituting for the nuisance parameters in the optimal estimating function data adaptive estimators. We illustrate this methodology in the context of prediction, and obtain in this manner double robust locally optimal estimators of marginal variable importance, accompanied with p-values and confidence intervals. In addition, we present a model based and machine learning approach to estimate covariate-adjusted variable importance. Finally, we generalize this methodology to variable importance parameters for time-dependent variables.

Suggested Citation

  • van der Laan Mark J., 2006. "Statistical Inference for Variable Importance," The International Journal of Biostatistics, De Gruyter, vol. 2(1), pages 1-33, February.
  • Handle: RePEc:bpj:ijbist:v:2:y:2006:i:1:n:2
    DOI: 10.2202/1557-4679.1008
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    Citations

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    Cited by:

    1. Sokbae Lee & Ryo Okui & Yoon†Jae Whang, 2017. "Doubly robust uniform confidence band for the conditional average treatment effect function," Journal of Applied Econometrics, John Wiley & Sons, Ltd., vol. 32(7), pages 1207-1225, November.
    2. Archer, Kellie J. & Kimes, Ryan V., 2008. "Empirical characterization of random forest variable importance measures," Computational Statistics & Data Analysis, Elsevier, vol. 52(4), pages 2249-2260, January.
    3. Alexander Herr, 2010. "Statistics for Categorical Surveys—A New Strategy for Multivariate Classification and Determining Variable Importance," Sustainability, MDPI, vol. 2(2), pages 1-18, February.
    4. Antoine Chambaz & Mark J. Laan, 2014. "Inference in Targeted Group-Sequential Covariate-Adjusted Randomized Clinical Trials," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 41(1), pages 104-140, March.
    5. Kelechi Igwe & Vaishali Sharda & Trevor Hefley, 2023. "Evaluating the Impact of Future Seasonal Climate Extremes on Crop Evapotranspiration of Maize in Western Kansas Using a Machine Learning Approach," Land, MDPI, vol. 12(8), pages 1-26, July.
    6. Elise D Riley & Torsten B Neilands & Kelly Moore & Jennifer Cohen & David R Bangsberg & Diane Havlir, 2012. "Social, Structural and Behavioral Determinants of Overall Health Status in a Cohort of Homeless and Unstably Housed HIV-Infected Men," PLOS ONE, Public Library of Science, vol. 7(4), pages 1-7, April.
    7. Iván Díaz & Alan Hubbard & Anna Decker & Mitchell Cohen, 2015. "Variable Importance and Prediction Methods for Longitudinal Problems with Missing Variables," PLOS ONE, Public Library of Science, vol. 10(3), pages 1-17, March.
    8. Tuglus Catherine & van der Laan Mark J., 2011. "Repeated Measures Semiparametric Regression Using Targeted Maximum Likelihood Methodology with Application to Transcription Factor Activity Discovery," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-31, January.
    9. Pedro Delicado, 2019. "Comments on: Data science, big data and statistics," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 28(2), pages 334-337, June.
    10. Guanbo Wang & Mireille E. Schnitzer & Dick Menzies & Piret Viiklepp & Timothy H. Holtz & Andrea Benedetti, 2020. "Estimating treatment importance in multidrug‐resistant tuberculosis using Targeted Learning: An observational individual patient data network meta‐analysis," Biometrics, The International Biometric Society, vol. 76(3), pages 1007-1016, September.
    11. Thomas Welchowski & Kelly O. Maloney & Richard Mitchell & Matthias Schmid, 2022. "Techniques to Improve Ecological Interpretability of Black-Box Machine Learning Models," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(1), pages 175-197, March.
    12. Geeven Geert & van der Laan Mark J. & de Gunst Mathisca C.M., 2012. "Comparison of Targeted Maximum Likelihood and Shrinkage Estimators of Parameters in Gene Networks," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(5), pages 1-29, September.
    13. Fuliang Deng & Luwei Cao & Fangzhou Li & Lanhui Li & Wang Man & Yijian Chen & Wenfeng Liu & Chaofeng Peng, 2023. "Mapping China’s Changing Gross Domestic Product Distribution Using Remotely Sensed and Point-of-Interest Data with Geographical Random Forest Model," Sustainability, MDPI, vol. 15(10), pages 1-18, May.
    14. Brian D. Williamson & Peter B. Gilbert & Marco Carone & Noah Simon, 2021. "Nonparametric variable importance assessment using machine learning techniques," Biometrics, The International Biometric Society, vol. 77(1), pages 9-22, March.
    15. Rose Sherri & van der Laan Mark J., 2008. "Simple Optimal Weighting of Cases and Controls in Case-Control Studies," The International Journal of Biostatistics, De Gruyter, vol. 4(1), pages 1-24, September.
    16. Tuglus Catherine & van der Laan Mark J., 2009. "Modified FDR Controlling Procedure for Multi-Stage Analyses," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-15, February.

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