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Bayesian nonparametric adjustment of confounding

Author

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  • Chanmin Kim
  • Mauricio Tec
  • Corwin Zigler

Abstract

Analysis of observational studies increasingly confronts the challenge of determining which of a possibly high‐dimensional set of available covariates are required to satisfy the assumption of ignorable treatment assignment for estimation of causal effects. We propose a Bayesian nonparametric approach that simultaneously (1) prioritizes inclusion of adjustment variables in accordance with existing principles of confounder selection; (2) estimates causal effects in a manner that permits complex relationships among confounders, exposures, and outcomes; and (3) provides causal estimates that account for uncertainty in the nature of confounding. The proposal relies on specification of multiple Bayesian additive regression trees models, linked together with a common prior distribution that accrues posterior selection probability to covariates on the basis of association with both the exposure and the outcome of interest. A set of extensive simulation studies demonstrates that the proposed method performs well relative to similarly‐motivated methodologies in a variety of scenarios. We deploy the method to investigate the causal effect of emissions from coal‐fired power plants on ambient air pollution concentrations, where the prospect of confounding due to local and regional meteorological factors introduces uncertainty around the confounding role of a high‐dimensional set of measured variables. Ultimately, we show that the proposed method produces more efficient and more consistent results across adjacent years than alternative methods, lending strength to the evidence of the causal relationship between SO2 emissions and ambient particulate pollution.

Suggested Citation

  • Chanmin Kim & Mauricio Tec & Corwin Zigler, 2023. "Bayesian nonparametric adjustment of confounding," Biometrics, The International Biometric Society, vol. 79(4), pages 3252-3265, December.
  • Handle: RePEc:bla:biomet:v:79:y:2023:i:4:p:3252-3265
    DOI: 10.1111/biom.13833
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    References listed on IDEAS

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    1. Susan M. Shortreed & Ashkan Ertefaie, 2017. "Outcome‐adaptive lasso: Variable selection for causal inference," Biometrics, The International Biometric Society, vol. 73(4), pages 1111-1122, December.
    2. Chi Wang & Francesca Dominici & Giovanni Parmigiani & Corwin Matthew Zigler, 2015. "Accounting for uncertainty in confounder and effect modifier selection when estimating average causal effects in generalized linear models," Biometrics, The International Biometric Society, vol. 71(3), pages 654-665, September.
    3. Chi Wang & Giovanni Parmigiani & Francesca Dominici, 2012. "Bayesian Effect Estimation Accounting for Adjustment Uncertainty," Biometrics, The International Biometric Society, vol. 68(3), pages 661-671, September.
    4. Chi Wang & Giovanni Parmigiani & Francesca Dominici, 2012. "Rejoinder: Bayesian Effect Estimation Accounting for Adjustment Uncertainty," Biometrics, The International Biometric Society, vol. 68(3), pages 680-686, September.
    5. Chanmin Kim & Lucas R. F. Henneman & Christine Choirat & Corwin M. Zigler, 2020. "Health effects of power plant emissions through ambient air quality," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 183(4), pages 1677-1703, October.
    6. Ander Wilson & Brian J. Reich, 2014. "Confounder selection via penalized credible regions," Biometrics, The International Biometric Society, vol. 70(4), pages 852-861, December.
    7. Kapelner, Adam & Bleich, Justin, 2016. "bartMachine: Machine Learning with Bayesian Additive Regression Trees," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 70(i04).
    8. Corwin Matthew Zigler & Francesca Dominici, 2014. "Uncertainty in Propensity Score Estimation: Bayesian Methods for Variable Selection and Model-Averaged Causal Effects," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(505), pages 95-107, March.
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