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NEMURO—a lower trophic level model for the North Pacific marine ecosystem

Citations

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Cited by:

  1. Hashioka, Taketo & Yamanaka, Yasuhiro, 2007. "Seasonal and regional variations of phytoplankton groups by top–down and bottom–up controls obtained by a 3D ecosystem model," Ecological Modelling, Elsevier, vol. 202(1), pages 68-80.
  2. Batchelder, Harold P. & Kashiwai, Makoto, 2007. "Ecosystem modeling with NEMURO within the PICES Climate Change and Carrying Capacity program," Ecological Modelling, Elsevier, vol. 202(1), pages 7-11.
  3. Hamza, Faseela & M, Anju & Valsala, Vinu & R, Smitha B., 2021. "A bioenergetics model for seasonal growth of Indian oil sardine (Sardinella longiceps) in the Indian west coast," Ecological Modelling, Elsevier, vol. 456(C).
  4. Kearney, Kelly A. & Stock, Charles & Aydin, Kerim & Sarmiento, Jorge L., 2012. "Coupling planktonic ecosystem and fisheries food web models for a pelagic ecosystem: Description and validation for the subarctic Pacific," Ecological Modelling, Elsevier, vol. 237, pages 43-62.
  5. Ito, Shin-Ichi & Megrey, Bernard A. & Kishi, Michio J. & Mukai, Daiki & Kurita, Yutaka & Ueno, Yasuhiro & Yamanaka, Yasuhiro, 2007. "On the interannual variability of the growth of Pacific saury (Cololabis saira): A simple 3-box model using NEMURO.FISH," Ecological Modelling, Elsevier, vol. 202(1), pages 174-183.
  6. Megrey, Bernard A. & Rose, Kenneth A. & Klumb, Robert A. & Hay, Douglas E. & Werner, Francisco E. & Eslinger, David L. & Smith, S. Lan, 2007. "A bioenergetics-based population dynamics model of Pacific herring (Clupea harengus pallasi) coupled to a lower trophic level nutrient–phytoplankton–zooplankton model: Description, calibration, and se," Ecological Modelling, Elsevier, vol. 202(1), pages 144-164.
  7. Xing, Lei & Chen, Yong & Zhang, Chongliang & Li, Bai & Tanaka, Kisei R. & Boenish, Robert & Ren, Yiping, 2020. "Evaluating impacts of imprecise parameters on the performance of an ecosystem model OSMOSE-JZB," Ecological Modelling, Elsevier, vol. 419(C).
  8. Mukai, Daiki & Kishi, Michio J. & Ito, Shin-ichi & Kurita, Yutaka, 2007. "The importance of spawning season on the growth of Pacific saury: A model-based study using NEMURO.FISH," Ecological Modelling, Elsevier, vol. 202(1), pages 165-173.
  9. Morales, Mark M. & Fiechter, Jerome & Field, John C. & Kashef, Neosha S & Hazen, Elliott L. & Carr, Mark H., 2024. "Development and application of a bioenergetics growth model for multiple early life stages of an ecologically important marine fish," Ecological Modelling, Elsevier, vol. 488(C).
  10. Hashioka, Taketo & Yamanaka, Yasuhiro, 2007. "Ecosystem change in the western North Pacific associated with global warming using 3D-NEMURO," Ecological Modelling, Elsevier, vol. 202(1), pages 95-104.
  11. Goebel, N.L. & Edwards, C.A. & Zehr, J.P. & Follows, M.J. & Morgan, S.G., 2013. "Modeled phytoplankton diversity and productivity in the California Current System," Ecological Modelling, Elsevier, vol. 264(C), pages 37-47.
  12. Komatsu, Kosei & Matsukawa, Yasuo & Nakata, Kaoru & Ichikawa, Tadafumi & Sasaki, Katsuyuki, 2007. "Effects of advective processes on planktonic distributions in the Kuroshio region using a 3-D lower trophic model and a data assimilative OGCM," Ecological Modelling, Elsevier, vol. 202(1), pages 105-119.
  13. Megrey, Bernard A. & Rose, Kenneth A. & Ito, Shin-ichi & Hay, Douglas E. & Werner, Francisco E. & Yamanaka, Yasuhiro & Aita, Maki Noguchi, 2007. "North Pacific basin-scale differences in lower and higher trophic level marine ecosystem responses to climate impacts using a nutrient-phytoplankton–zooplankton model coupled to a fish bioenergetics m," Ecological Modelling, Elsevier, vol. 202(1), pages 196-210.
  14. Jann Paul Mattern & Christopher A Edwards & Christopher N Hill, 2019. "Dual number-based variational data assimilation: Constructing exact tangent linear and adjoint code from nonlinear model evaluations," PLOS ONE, Public Library of Science, vol. 14(10), pages 1-10, October.
  15. Terui, Takeshi & Kishi, Michio J., 2008. "Population dynamics model of Copepoda (Neocalanus cristatus) in the northwestern subarctic Pacific," Ecological Modelling, Elsevier, vol. 215(1), pages 77-88.
  16. Fan, Wei & Song, Jinbao, 2014. "A numerical study of the seasonal variations of nutrients in the Changjiang River estuary and its adjacent sea area," Ecological Modelling, Elsevier, vol. 291(C), pages 69-81.
  17. Brewin, Robert J.W. & Sathyendranath, Shubha & Hirata, Takafumi & Lavender, Samantha J. & Barciela, Rosa M. & Hardman-Mountford, Nick J., 2010. "A three-component model of phytoplankton size class for the Atlantic Ocean," Ecological Modelling, Elsevier, vol. 221(11), pages 1472-1483.
  18. Record, N.R. & Pershing, A.J. & Maps, F., 2013. "Emergent copepod communities in an adaptive trait-structured model," Ecological Modelling, Elsevier, vol. 260(C), pages 11-24.
  19. Aita, Maki Noguchi & Yamanaka, Yasuhiro & Kishi, Michio J., 2007. "Interdecadal variation of the lower trophic ecosystem in the northern Pacific between 1948 and 2002, in a 3-D implementation of the NEMURO model," Ecological Modelling, Elsevier, vol. 202(1), pages 81-94.
  20. Bracis, Chloe & Lehuta, Sigrid & Savina-Rolland, Marie & Travers-Trolet, Morgane & Girardin, Raphaël, 2020. "Improving confidence in complex ecosystem models: The sensitivity analysis of an Atlantis ecosystem model," Ecological Modelling, Elsevier, vol. 431(C).
  21. Masuda, Yoshio & Yamanaka, Yasuhiro & Hirata, Takafumi & Nakano, Hideyuki, 2017. "Competition and community assemblage dynamics within a phytoplankton functional group: Simulation using an eddy-resolving model to disentangle deterministic and random effects," Ecological Modelling, Elsevier, vol. 343(C), pages 1-14.
  22. Fiechter, Jerome, 2012. "Assessing marine ecosystem model properties from ensemble calculations," Ecological Modelling, Elsevier, vol. 242(C), pages 164-179.
  23. Rose, Kenneth A. & Megrey, Bernard A. & Werner, Francisco E. & Ware, Dan M., 2007. "Calibration of the NEMURO nutrient–phytoplankton–zooplankton food web model to a coastal ecosystem: Evaluation of an automated calibration approach," Ecological Modelling, Elsevier, vol. 202(1), pages 38-51.
  24. Xue, Huijie & Incze, Lewis & Xu, Danya & Wolff, Nicholas & Pettigrew, Neal, 2008. "Connectivity of lobster populations in the coastal Gulf of Maine," Ecological Modelling, Elsevier, vol. 210(1), pages 193-211.
  25. Miho Ishizu & Yasumasa Miyazawa & Tomohiko Tsunoda & Xinyu Guo, 2019. "Development of a Biogeochemical and Carbon Model Related to Ocean Acidification Indices with an Operational Ocean Model Product in the North Western Pacific," Sustainability, MDPI, vol. 11(9), pages 1-28, May.
  26. Masuda, Yoshio & Yamanaka, Yasuhiro & Hirata, Takafumi & Nakano, Hideyuki & Kohyama, Takashi S., 2020. "Inhibition of competitive exclusion due to phytoplankton dispersion: a contribution for solving Hutchinson's paradox," Ecological Modelling, Elsevier, vol. 430(C).
  27. Kakehi, Shigeho & Abo, Jun-ichi & Miyamoto, Hiroomi & Fuji, Taiki & Watanabe, Kazuyoshi & Yamashita, Hideyuki & Suyama, Satoshi, 2020. "Forecasting Pacific saury (Cololabis saira) fishing grounds off Japan using a migration model driven by an ocean circulation model," Ecological Modelling, Elsevier, vol. 431(C).
  28. Fiechter, J. & Herbei, R. & Leeds, W. & Brown, J. & Milliff, R. & Wikle, C. & Moore, A. & Powell, T., 2013. "A Bayesian parameter estimation method applied to a marine ecosystem model for the coastal Gulf of Alaska," Ecological Modelling, Elsevier, vol. 258(C), pages 122-133.
  29. Vallina, S.M. & Le Quéré, C., 2008. "Preferential uptake of NH4+ over NO3− in marine ecosystem models: A simple and more consistent parameterization," Ecological Modelling, Elsevier, vol. 218(3), pages 393-397.
  30. Xing, Lei & Zhang, Chongliang & Chen, Yong & Shin, Yunne-Jai & Verley, Philippe & Yu, Haiqing & Ren, Yiping, 2017. "An individual-based model for simulating the ecosystem dynamics of Jiaozhou Bay, China," Ecological Modelling, Elsevier, vol. 360(C), pages 120-131.
  31. Werner, Francisco E. & Ito, Shin-Ichi & Megrey, Bernard A. & Kishi, Michio J., 2007. "Synthesis of the NEMURO model studies and future directions of marine ecosystem modeling," Ecological Modelling, Elsevier, vol. 202(1), pages 211-223.
  32. Dodson, Stephanie & Abrahms, Briana & Bograd, Steven J. & Fiechter, Jerome & Hazen, Elliott L., 2020. "Disentangling the biotic and abiotic drivers of emergent migratory behavior using individual-based models," Ecological Modelling, Elsevier, vol. 432(C).
  33. Fujii, Masahiko & Yamanaka, Yasuhiro & Nojiri, Yukihiro & Kishi, Michio J. & Chai, Fei, 2007. "Comparison of seasonal characteristics in biogeochemistry among the subarctic North Pacific stations described with a NEMURO-based marine ecosystem model," Ecological Modelling, Elsevier, vol. 202(1), pages 52-67.
  34. Choi, Jang-Geun & Lippmann, Thomas C. & Harvey, Elizabeth L., 2023. "Analytical population dynamics underlying harmful algal blooms triggered by prey avoidance," Ecological Modelling, Elsevier, vol. 481(C).
  35. Zuenko, Yury I., 2007. "Application of a lower trophic level model to a coastal sea ecosystem," Ecological Modelling, Elsevier, vol. 202(1), pages 132-143.
  36. Rose, Kenneth A. & Werner, Francisco E. & Megrey, Bernard A. & Aita, Maki Noguchi & Yamanaka, Yasuhiro & Hay, Douglas E. & Schweigert, Jake F. & Foster, Matthew Birch, 2007. "Simulated herring growth responses in the Northeastern Pacific to historic temperature and zooplankton conditions generated by the 3-dimensional NEMURO nutrient–phytoplankton–zooplankton model," Ecological Modelling, Elsevier, vol. 202(1), pages 184-195.
  37. Yoshie, Naoki & Yamanaka, Yasuhiro & Rose, Kenneth A. & Eslinger, David L. & Ware, Daniel M. & Kishi, Michio J., 2007. "Parameter sensitivity study of the NEMURO lower trophic level marine ecosystem model," Ecological Modelling, Elsevier, vol. 202(1), pages 26-37.
  38. Sailley, S.F. & Vogt, M. & Doney, S.C. & Aita, M.N. & Bopp, L. & Buitenhuis, E.T. & Hashioka, T. & Lima, I. & Le Quéré, C. & Yamanaka, Y., 2013. "Comparing food web structures and dynamics across a suite of global marine ecosystem models," Ecological Modelling, Elsevier, vol. 261, pages 43-57.
  39. Wainwright, Thomas C. & Feinberg, Leah R. & Hooff, Rian C. & Peterson, William T., 2007. "A comparison of two lower trophic models for the California Current System," Ecological Modelling, Elsevier, vol. 202(1), pages 120-131.
  40. Zouiten, Hala & Díaz, César Álvarez & Gómez, Andrés García & Cortezón, José Antonio Revilla & Alba, Javier García, 2013. "An advanced tool for eutrophication modeling in coastal lagoons: Application to the Victoria lagoon in the north of Spain," Ecological Modelling, Elsevier, vol. 265(C), pages 99-113.
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