IDEAS home Printed from https://ideas.repec.org/a/spr/jagbes/v28y2023i2d10.1007_s13253-022-00523-0.html
   My bibliography  Save this article

Spatiotemporal Exposure Prediction with Penalized Regression

Author

Listed:
  • Nathan A. Ryder

    (Colorado State University)

  • Joshua P. Keller

    (Colorado State University)

Abstract

Exposure to ambient air pollution is a global health burden, and assessing its relationships to health effects requires predicting concentrations of ambient pollution over time and space. We propose a spatiotemporal penalized regression model that provides high predictive accuracy and greater computation speed than competing approaches. This model uses overfitting and time-smoothing penalties to provide accurate predictions when there are large amounts of temporal missingness in the data. When compared to spatial-only and spatiotemporal universal kriging models in simulations, our model performs similarly under most conditions and can outperform the others when temporal missingness in the data is high. As the number of spatial locations in a data set increases, the computation time of our penalized regression model is more scalable than either of the compared methods. We demonstrate our model using total particulate matter mass ( $$\hbox {PM}_{2.5}$$ PM 2.5 and $$\hbox {PM}_{{10}}$$ PM 10 ) and using sulfate and silicon component concentrations. For total mass, our model has lower cross-validated RMSE than the spatial-only universal kriging method, but not the spatiotemporal version. For the component concentrations, which are less frequently observed, our model outperforms both of the other approaches, showing 15% and 13% improvements over the spatiotemporal universal kriging method for sulfate and silicon. The computational speed of our model also allows for the use of nonparametric bootstrap for measurement error correction, a valuable tool in two-stage health effects models. Supplementary materials accompanying this paper appear online.

Suggested Citation

  • Nathan A. Ryder & Joshua P. Keller, 2023. "Spatiotemporal Exposure Prediction with Penalized Regression," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 28(2), pages 260-278, June.
  • Handle: RePEc:spr:jagbes:v:28:y:2023:i:2:d:10.1007_s13253-022-00523-0
    DOI: 10.1007/s13253-022-00523-0
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s13253-022-00523-0
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s13253-022-00523-0?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Michela Cameletti & Finn Lindgren & Daniel Simpson & Håvard Rue, 2013. "Spatio-temporal modeling of particulate matter concentration through the SPDE approach," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 97(2), pages 109-131, April.
    2. Simon N. Wood, 2003. "Thin plate regression splines," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 65(1), pages 95-114, February.
    3. Brian J. Reich & Howard H. Chang & Kristen M. Foley, 2014. "A spectral method for spatial downscaling," Biometrics, The International Biometric Society, vol. 70(4), pages 932-942, December.
    4. Reich, Brian J. & Fuentes, Montserrat & Dunson, David B., 2011. "Bayesian Spatial Quantile Regression," Journal of the American Statistical Association, American Statistical Association, vol. 106(493), pages 6-20.
    5. Silas Bergen & Lianne Sheppard & Joel D. Kaufman & Adam A. Szpiro, 2016. "Multipollutant measurement error in air pollution epidemiology studies arising from predicting exposures with penalized regression splines," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 65(5), pages 731-753, November.
    6. Gneiting T., 2002. "Nonseparable, Stationary Covariance Functions for Space-Time Data," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 590-600, June.
    7. D. Pati & B. J. Reich & D. B. Dunson, 2011. "Bayesian geostatistical modelling with informative sampling locations," Biometrika, Biometrika Trust, vol. 98(1), pages 35-48.
    8. Veronica J. Berrocal & Alan E. Gelfand & David M. Holland, 2012. "Space-Time Data fusion Under Error in Computer Model Output: An Application to Modeling Air Quality," Biometrics, The International Biometric Society, vol. 68(3), pages 837-848, September.
    9. Schlather, Martin & Malinowski, Alexander & Menck, Peter J. & Oesting, Marco & Strokorb, Kirstin, 2015. "Analysis, Simulation and Prediction of Multivariate Random Fields with Package RandomFields," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 63(i08).
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Brian J. Reich & Shu Yang & Yawen Guan & Andrew B. Giffin & Matthew J. Miller & Ana Rappold, 2021. "A Review of Spatial Causal Inference Methods for Environmental and Epidemiological Applications," International Statistical Review, International Statistical Institute, vol. 89(3), pages 605-634, December.
    2. Ferraccioli, Federico & Sangalli, Laura M. & Finos, Livio, 2022. "Some first inferential tools for spatial regression with differential regularization," Journal of Multivariate Analysis, Elsevier, vol. 189(C).
    3. Suman Majumder & Yawen Guan & Brian J. Reich & Susan O’Neill & Ana G. Rappold, 2021. "Statistical Downscaling with Spatial Misalignment: Application to Wildland Fire $$\hbox {PM}_{2.5}$$ PM 2.5 Concentration Forecasting," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(1), pages 23-44, March.
    4. Gabriel Riutort-Mayol & Virgilio Gómez-Rubio & José Luis Lerma & Julio M. del Hoyo-Meléndez, 2020. "Correlated Functional Models with Derivative Information for Modeling Microfading Spectrometry Data on Rock Art Paintings," Mathematics, MDPI, vol. 8(12), pages 1-25, December.
    5. Brian J. Reich & Howard H. Chang & Kristen M. Foley, 2014. "A spectral method for spatial downscaling," Biometrics, The International Biometric Society, vol. 70(4), pages 932-942, December.
    6. I. Gede Nyoman Mindra Jaya & Henk Folmer, 2022. "Spatiotemporal high-resolution prediction and mapping: methodology and application to dengue disease," Journal of Geographical Systems, Springer, vol. 24(4), pages 527-581, October.
    7. M.L. Nores & M.P. Díaz, 2016. "Bootstrap hypothesis testing in generalized additive models for comparing curves of treatments in longitudinal studies," Journal of Applied Statistics, Taylor & Francis Journals, vol. 43(5), pages 810-826, April.
    8. Georgios Gioldasis & Antonio Musolesi & Michel Simioni, 2020. "Model uncertainty, nonlinearities and out-of-sample comparison: evidence from international technology diffusion," Working Papers hal-02790523, HAL.
    9. Leonardo Padilla & Bernado Lagos‐Álvarez & Jorge Mateu & Emilio Porcu, 2020. "Space‐time autoregressive estimation and prediction with missing data based on Kalman filtering," Environmetrics, John Wiley & Sons, Ltd., vol. 31(7), November.
    10. Noel Cressie & Andrew Zammit-Mangion, 2016. "Multivariate spatial covariance models: a conditional approach," Biometrika, Biometrika Trust, vol. 103(4), pages 915-935.
    11. Iñaki Galán & Lorena Simón & Elena Boldo & Cristina Ortiz & Rafael Fernández-Cuenca & Cristina Linares & María José Medrano & Roberto Pastor-Barriuso, 2017. "Changes in hospitalizations for chronic respiratory diseases after two successive smoking bans in Spain," PLOS ONE, Public Library of Science, vol. 12(5), pages 1-14, May.
    12. Longhi, Christian & Musolesi, Antonio & Baumont, Catherine, 2014. "Modeling structural change in the European metropolitan areas during the process of economic integration," Economic Modelling, Elsevier, vol. 37(C), pages 395-407.
    13. Strasak, Alexander M. & Umlauf, Nikolaus & Pfeiffer, Ruth M. & Lang, Stefan, 2011. "Comparing penalized splines and fractional polynomials for flexible modelling of the effects of continuous predictor variables," Computational Statistics & Data Analysis, Elsevier, vol. 55(4), pages 1540-1551, April.
    14. Yuzhu Tian & Er’qian Li & Maozai Tian, 2016. "Bayesian joint quantile regression for mixed effects models with censoring and errors in covariates," Computational Statistics, Springer, vol. 31(3), pages 1031-1057, September.
    15. Roberto Basile & Luigi Benfratello & Davide Castellani, 2012. "Geoadditive models for regional count data: an application to industrial location," ERSA conference papers ersa12p83, European Regional Science Association.
    16. Paolo Veneri, 2018. "Urban spatial structure in OECD cities: Is urban population decentralising or clustering?," Papers in Regional Science, Wiley Blackwell, vol. 97(4), pages 1355-1374, November.
    17. Schwemmer, Philipp & Güpner, Franziska & Adler, Sven & Klingbeil, Knut & Garthe, Stefan, 2016. "Modelling small-scale foraging habitat use in breeding Eurasian oystercatchers (Haematopus ostralegus) in relation to prey distribution and environmental predictors," Ecological Modelling, Elsevier, vol. 320(C), pages 322-333.
    18. E. Zanini & E. Eastoe & M. J. Jones & D. Randell & P. Jonathan, 2020. "Flexible covariate representations for extremes," Environmetrics, John Wiley & Sons, Ltd., vol. 31(5), August.
    19. Soutik Ghosal & Timothy S. Lau & Jeremy Gaskins & Maiying Kong, 2020. "A hierarchical mixed effect hurdle model for spatiotemporal count data and its application to identifying factors impacting health professional shortages," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 69(5), pages 1121-1144, November.
    20. Damien Rousselière, 2019. "A Flexible Approach to Age Dependence in Organizational Mortality: Comparing the Life Duration for Cooperative and Non-Cooperative Enterprises Using a Bayesian Generalized Additive Discrete Time Survi," Journal of Quantitative Economics, Springer;The Indian Econometric Society (TIES), vol. 17(4), pages 829-855, December.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:jagbes:v:28:y:2023:i:2:d:10.1007_s13253-022-00523-0. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.