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Imputation Approaches for Animal Movement Modeling

Author

Listed:
  • Henry Scharf

    (Colorado State University)

  • Mevin B. Hooten

    (U.S. Geological Survey, Colorado Cooperative Fish and Wildlife Research Unit, Department of Fish, Wildlife, and Conservation Biology, Department of Statistics, Colorado State University)

  • Devin S. Johnson

    (Alaska Fisheries Science Center, NOAA Fisheries)

Abstract

The analysis of telemetry data is common in animal ecological studies. While the collection of telemetry data for individual animals has improved dramatically, the methods to properly account for inherent uncertainties (e.g., measurement error, dependence, barriers to movement) have lagged behind. Still, many new statistical approaches have been developed to infer unknown quantities affecting animal movement or predict movement based on telemetry data. Hierarchical statistical models are useful to account for some of the aforementioned uncertainties, as well as provide population-level inference, but they often come with an increased computational burden. For certain types of statistical models, it is straightforward to provide inference if the latent true animal trajectory is known, but challenging otherwise. In these cases, approaches related to multiple imputation have been employed to account for the uncertainty associated with our knowledge of the latent trajectory. Despite the increasing use of imputation approaches for modeling animal movement, the general sensitivity and accuracy of these methods have not been explored in detail. We provide an introduction to animal movement modeling and describe how imputation approaches may be helpful for certain types of models. We also assess the performance of imputation approaches in two simulation studies. Our simulation studies suggests that inference for model parameters directly related to the location of an individual may be more accurate than inference for parameters associated with higher-order processes such as velocity or acceleration. Finally, we apply these methods to analyze a telemetry data set involving northern fur seals (Callorhinus ursinus) in the Bering Sea. Supplementary materials accompanying this paper appear online.

Suggested Citation

  • Henry Scharf & Mevin B. Hooten & Devin S. Johnson, 2017. "Imputation Approaches for Animal Movement Modeling," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 22(3), pages 335-352, September.
  • Handle: RePEc:spr:jagbes:v:22:y:2017:i:3:d:10.1007_s13253-017-0294-5
    DOI: 10.1007/s13253-017-0294-5
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    References listed on IDEAS

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    1. Mevin B. Hooten & Frances E. Buderman & Brian M. Brost & Ephraim M. Hanks & Jacob S. Ivan, 2016. "Hierarchical animal movement models for population‐level inference," Environmetrics, John Wiley & Sons, Ltd., vol. 27(6), pages 322-333, September.
    2. Ephraim M Hanks & Mevin B Hooten & Devin S Johnson & Jeremy T Sterling, 2011. "Velocity-Based Movement Modeling for Individual and Population Level Inference," PLOS ONE, Public Library of Science, vol. 6(8), pages 1-17, August.
    3. Ormerod, J. T. & Wand, M. P., 2010. "Explaining Variational Approximations," The American Statistician, American Statistical Association, vol. 64(2), pages 140-153.
    4. Brett T. McClintock, 2017. "Incorporating Telemetry Error into Hidden Markov Models of Animal Movement Using Multiple Imputation," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 22(3), pages 249-269, September.
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    Cited by:

    1. Svetlana V. Tishkovskaya & Paul G. Blackwell, 2021. "Bayesian estimation of heterogeneous environments from animal movement data," Environmetrics, John Wiley & Sons, Ltd., vol. 32(6), September.
    2. Xinyi Lu & Mevin B. Hooten & Ann M. Raiho & David K. Swanson & Carl A. Roland & Sarah E. Stehn, 2023. "Latent trajectory models for spatio‐temporal dynamics in Alaskan ecosystems," Biometrics, The International Biometric Society, vol. 79(4), pages 3664-3675, December.
    3. Joshua Hewitt & Robert S. Schick & Alan E. Gelfand, 2021. "Continuous-Time Discrete-State Modeling for Deep Whale Dives," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(2), pages 180-199, June.
    4. Toryn L. J. Schafer & Christopher K. Wikle & Jay A. VonBank & Bart M. Ballard & Mitch D. Weegman, 2020. "A Bayesian Markov Model with Pólya-Gamma Sampling for Estimating Individual Behavior Transition Probabilities from Accelerometer Classifications," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 25(3), pages 365-382, September.
    5. Ethan Lawler & Kim Whoriskey & William H. Aeberhard & Chris Field & Joanna Mills Flemming, 2019. "The Conditionally Autoregressive Hidden Markov Model (CarHMM): Inferring Behavioural States from Animal Tracking Data Exhibiting Conditional Autocorrelation," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 24(4), pages 651-668, December.

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