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A multinomial generalized linear mixed model for clustered competing risks data

Author

Listed:
  • Henrique Aparecido Laureano

    (Instituto de Pesquisa Pelé Pequeno Príncipe)

  • Ricardo Rasmussen Petterle

    (Universidade Federal do Paraná)

  • Guilherme Parreira da Silva

    (Universidade Federal do Paraná)

  • Paulo Justiniano Ribeiro Junior

    (Universidade Federal do Paraná)

  • Wagner Hugo Bonat

    (Universidade Federal do Paraná)

Abstract

Clustered competing risks data are a complex failure time data scheme. Its main characteristics are the cluster structure, which implies a latent within-cluster dependence between its elements, and its multiple variables competing to be the one responsible for the occurrence of an event, the failure. To handle this kind of data, we propose a full likelihood approach, based on generalized linear mixed models instead the usual complex frailty model. We model the competing causes in the probability scale, in terms of the cumulative incidence function (CIF). A multinomial distribution is assumed for the competing causes and censorship, conditioned on the latent effects that are accommodated by a multivariate Gaussian distribution. The CIF is specified as the product of an instantaneous risk level function with a failure time trajectory level function. The estimation procedure is performed through the R package Template Model Builder, an C++ based framework with efficient Laplace approximation and automatic differentiation routines. A large simulation study was performed, based on different latent structure formulations. The model fitting was challenging and our results indicated that a latent structure where both risk and failure time trajectory levels are correlated is required to reach reasonable estimation.

Suggested Citation

  • Henrique Aparecido Laureano & Ricardo Rasmussen Petterle & Guilherme Parreira da Silva & Paulo Justiniano Ribeiro Junior & Wagner Hugo Bonat, 2024. "A multinomial generalized linear mixed model for clustered competing risks data," Computational Statistics, Springer, vol. 39(3), pages 1417-1434, May.
  • Handle: RePEc:spr:compst:v:39:y:2024:i:3:d:10.1007_s00180-023-01353-5
    DOI: 10.1007/s00180-023-01353-5
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    References listed on IDEAS

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    1. Kristensen, Kasper & Nielsen, Anders & Berg, Casper W. & Skaug, Hans & Bell, Bradley M., 2016. "TMB: Automatic Differentiation and Laplace Approximation," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 70(i05).
    2. Cheng, Yu & Fine, Jason P. & Kosorok, Michael R., 2007. "Nonparametric Association Analysis of Bivariate Competing-Risks Data," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 1407-1415, December.
    3. Yu Cheng & Jason P. Fine & Michael R. Kosorok, 2009. "Nonparametric Association Analysis of Exchangeable Clustered Competing Risks Data," Biometrics, The International Biometric Society, vol. 65(2), pages 385-393, June.
    4. Martin G. Larson & Gregg E. Dinse, 1985. "A Mixture Model for the Regression Analysis of Competing Risks Data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 34(3), pages 201-211, November.
    5. Malay Naskar & Kalyan Das & Joseph G. Ibrahim, 2005. "A Semiparametric Mixture Model for Analyzing Clustered Competing Risks Data," Biometrics, The International Biometric Society, vol. 61(3), pages 729-737, September.
    6. Cole C Monnahan & Kasper Kristensen, 2018. "No-U-turn sampling for fast Bayesian inference in ADMB and TMB: Introducing the adnuts and tmbstan R packages," PLOS ONE, Public Library of Science, vol. 13(5), pages 1-10, May.
    7. Thomas H. Scheike & Yanqing Sun & Mei-Jie Zhang & Tina Kold Jensen, 2010. "A semiparametric random effects model for multivariate competing risks data," Biometrika, Biometrika Trust, vol. 97(1), pages 133-145.
    8. Wagner Hugo Bonat & Paulo Justiniano Ribeiro Jr, 2016. "Practical likelihood analysis for spatial generalized linear mixed models," Environmetrics, John Wiley & Sons, Ltd., vol. 27(2), pages 83-89, March.
    9. Wagner Hugo Bonat & Bent Jørgensen, 2016. "Multivariate covariance generalized linear models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 65(5), pages 649-675, November.
    10. J. P. Fine, 1999. "Analysing competing risks data with transformation models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(4), pages 817-830.
    11. James Vaupel & Kenneth Manton & Eric Stallard, 1979. "The impact of heterogeneity in individual frailty on the dynamics of mortality," Demography, Springer;Population Association of America (PAA), vol. 16(3), pages 439-454, August.
    12. Paul Embrechts, 2009. "Copulas: A Personal View," Journal of Risk & Insurance, The American Risk and Insurance Association, vol. 76(3), pages 639-650, September.
    13. Yu Cheng & Jason P. Fine, 2012. "Cumulative incidence association models for bivariate competing risks data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(2), pages 183-202, March.
    14. D. R. Cox, 2004. "A note on pseudolikelihood constructed from marginal densities," Biometrika, Biometrika Trust, vol. 91(3), pages 729-737, September.
    15. Krupskii, Pavel & Joe, Harry, 2013. "Factor copula models for multivariate data," Journal of Multivariate Analysis, Elsevier, vol. 120(C), pages 85-101.
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