Some searches may not work properly. We apologize for the inconvenience.
My bibliography Save this articleNoise Propagation in Gene Regulation Networks Involving Interlinked Positive and Negative Feedback Loops
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0051840
Download full text from publisher
References listed on IDEAS
- Benjamin B Kaufmann & Qiong Yang & Jerome T Mettetal & Alexander van Oudenaarden, 2007. "Heritable Stochastic Switching Revealed by Single-Cell Genealogy," PLOS Biology, Public Library of Science, vol. 5(9), pages 1-8, September.
- William J. Blake & Mads KÆrn & Charles R. Cantor & J. J. Collins, 2003. "Noise in eukaryotic gene expression," Nature, Nature, vol. 422(6932), pages 633-637, April.
- Attila Becskei & Luis Serrano, 2000. "Engineering stability in gene networks by autoregulation," Nature, Nature, vol. 405(6786), pages 590-593, June.
- Alex Sigal & Ron Milo & Ariel Cohen & Naama Geva-Zatorsky & Yael Klein & Yuvalal Liron & Nitzan Rosenfeld & Tamar Danon & Natalie Perzov & Uri Alon, 2006. "Variability and memory of protein levels in human cells," Nature, Nature, vol. 444(7119), pages 643-646, November.
- Matthew Freeman, 2000. "Feedback control of intercellular signalling in development," Nature, Nature, vol. 408(6810), pages 313-319, November.
- Johan Paulsson, 2004. "Summing up the noise in gene networks," Nature, Nature, vol. 427(6973), pages 415-418, January.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Chih-Yuan Hsu & Bor-Sen Chen, 2016. "Systematic Design of a Metal Ion Biosensor: A Multi-Objective Optimization Approach," PLOS ONE, Public Library of Science, vol. 11(11), pages 1-16, November.
- Guo, Shengli & Xu, Ying & Wang, Chunni & Jin, Wuyin & Hobiny, Aatef & Ma, Jun, 2017. "Collective response, synapse coupling and field coupling in neuronal network," Chaos, Solitons & Fractals, Elsevier, vol. 105(C), pages 120-127.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Abhyudai Singh & Mohammad Soltani, 2013. "Quantifying Intrinsic and Extrinsic Variability in Stochastic Gene Expression Models," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-12, December.
- Stefano Ciliberti & Olivier C Martin & Andreas Wagner, 2007. "Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology," PLOS Computational Biology, Public Library of Science, vol. 3(2), pages 1-10, February.
- Kyung H Kim & Herbert M Sauro, 2012. "Adjusting Phenotypes by Noise Control," PLOS Computational Biology, Public Library of Science, vol. 8(1), pages 1-14, January.
- Tobias May & Lee Eccleston & Sabrina Herrmann & Hansjörg Hauser & Jorge Goncalves & Dagmar Wirth, 2008. "Bimodal and Hysteretic Expression in Mammalian Cells from a Synthetic Gene Circuit," PLOS ONE, Public Library of Science, vol. 3(6), pages 1-7, June.
- Luca Cardelli & Rosa D Hernansaiz-Ballesteros & Neil Dalchau & Attila Csikász-Nagy, 2017. "Efficient Switches in Biology and Computer Science," PLOS Computational Biology, Public Library of Science, vol. 13(1), pages 1-16, January.
- Chen, Aimin & Tian, Tianhai & Chen, Yiren & Zhou, Tianshou, 2022. "Stochastic analysis of a complex gene-expression model," Chaos, Solitons & Fractals, Elsevier, vol. 160(C).
- Zhou, Peipei & Cai, Shuiming & Liu, Zengrong & Chen, Luonan & Wang, Ruiqi, 2013. "Coupling switches and oscillators as a means to shape cellular signals in biomolecular systems," Chaos, Solitons & Fractals, Elsevier, vol. 50(C), pages 115-126.
- Karl P. Gerhardt & Satyajit D. Rao & Evan J. Olson & Oleg A. Igoshin & Jeffrey J. Tabor, 2021. "Independent control of mean and noise by convolution of gene expression distributions," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
- Tina Toni & Bruce Tidor, 2013. "Combined Model of Intrinsic and Extrinsic Variability for Computational Network Design with Application to Synthetic Biology," PLOS Computational Biology, Public Library of Science, vol. 9(3), pages 1-17, March.
- Arjun Raj & Charles S Peskin & Daniel Tranchina & Diana Y Vargas & Sanjay Tyagi, 2006. "Stochastic mRNA Synthesis in Mammalian Cells," PLOS Biology, Public Library of Science, vol. 4(10), pages 1-13, September.
- Benjamin B Kaufmann & Qiong Yang & Jerome T Mettetal & Alexander van Oudenaarden, 2007. "Heritable Stochastic Switching Revealed by Single-Cell Genealogy," PLOS Biology, Public Library of Science, vol. 5(9), pages 1-8, September.
- Elijah Roberts & Andrew Magis & Julio O Ortiz & Wolfgang Baumeister & Zaida Luthey-Schulten, 2011. "Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study," PLOS Computational Biology, Public Library of Science, vol. 7(3), pages 1-21, March.
- Rutger Hermsen & Bas Ursem & Pieter Rein ten Wolde, 2010. "Combinatorial Gene Regulation Using Auto-Regulation," PLOS Computational Biology, Public Library of Science, vol. 6(6), pages 1-13, June.
- Namiko Mitarai & Ian B Dodd & Michael T Crooks & Kim Sneppen, 2008. "The Generation of Promoter-Mediated Transcriptional Noise in Bacteria," PLOS Computational Biology, Public Library of Science, vol. 4(7), pages 1-9, July.
- Jin Wang & Bo Huang & Xuefeng Xia & Zhirong Sun, 2006. "Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle," PLOS Computational Biology, Public Library of Science, vol. 2(11), pages 1-10, November.
- Lee, Julian, 2023. "Poisson distributions in stochastic dynamics of gene expression: What events do they count?," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 630(C).
- Blasi, Monica Francesca & Casorelli, Ida & Colosimo, Alfredo & Blasi, Francesco Simone & Bignami, Margherita & Giuliani, Alessandro, 2005. "A recursive network approach can identify constitutive regulatory circuits in gene expression data," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 348(C), pages 349-370.
- Monica T. Dayao & Maigan Brusko & Clive Wasserfall & Ziv Bar-Joseph, 2022. "Membrane marker selection for segmenting single cell spatial proteomics data," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
- Simeon D. Castle & Michiel Stock & Thomas E. Gorochowski, 2024. "Engineering is evolution: a perspective on design processes to engineer biology," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
- Valenti, D. & Tranchina, L. & Brai, M. & Caruso, A. & Cosentino, C. & Spagnolo, B., 2008. "Environmental metal pollution considered as noise: Effects on the spatial distribution of benthic foraminifera in two coastal marine areas of Sicily (Southern Italy)," Ecological Modelling, Elsevier, vol. 213(3), pages 449-462.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0051840. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.