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Resolving chemical-motif similarity with enhanced atomic structure representations for accurately predicting descriptors at metallic interfaces

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  • Cheng Cai

    (600 Dunyu Road
    Zhejiang Baima Lake Laboratory
    18 Shilongshan Road)

  • Tao Wang

    (600 Dunyu Road
    Zhejiang Baima Lake Laboratory
    18 Shilongshan Road)

Abstract

Accurately predicting catalytic descriptors with machine learning (ML) methods is significant to achieving accelerated catalyst design, where a unique representation of the atomic structure of each system is the key to developing a universal, efficient, and accurate ML model that is capable of tackling diverse degrees of complexity in heterogeneous catalysis scenarios. Herein, we integrate equivariant message-passing-enhanced atomic structure representation to resolve chemical-motif similarity in highly complex catalytic systems. Our developed equivariant graph neural network (equivGNN) model achieves mean absolute errors

Suggested Citation

  • Cheng Cai & Tao Wang, 2025. "Resolving chemical-motif similarity with enhanced atomic structure representations for accurately predicting descriptors at metallic interfaces," Nature Communications, Nature, vol. 16(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-63860-x
    DOI: 10.1038/s41467-025-63860-x
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    References listed on IDEAS

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    1. Victor Fung & Guoxiang Hu & P. Ganesh & Bobby G. Sumpter, 2021. "Machine learned features from density of states for accurate adsorption energy prediction," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    2. Miao Zhong & Kevin Tran & Yimeng Min & Chuanhao Wang & Ziyun Wang & Cao-Thang Dinh & Phil De Luna & Zongqian Yu & Armin Sedighian Rasouli & Peter Brodersen & Song Sun & Oleksandr Voznyy & Chih-Shan Ta, 2020. "Accelerated discovery of CO2 electrocatalysts using active machine learning," Nature, Nature, vol. 581(7807), pages 178-183, May.
    3. Pushkar G. Ghanekar & Siddharth Deshpande & Jeffrey Greeley, 2022. "Adsorbate chemical environment-based machine learning framework for heterogeneous catalysis," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    4. Simon Batzner & Albert Musaelian & Lixin Sun & Mario Geiger & Jonathan P. Mailoa & Mordechai Kornbluth & Nicola Molinari & Tess E. Smidt & Boris Kozinsky, 2022. "E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    5. Shih-Han Wang & Hemanth Somarajan Pillai & Siwen Wang & Luke E. K. Achenie & Hongliang Xin, 2021. "Infusing theory into deep learning for interpretable reactivity prediction," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    6. Kihoon Bang & Doosun Hong & Youngtae Park & Donghun Kim & Sang Soo Han & Hyuck Mo Lee, 2023. "Machine learning-enabled exploration of the electrochemical stability of real-scale metallic nanoparticles," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    7. Keith T. Butler & Daniel W. Davies & Hugh Cartwright & Olexandr Isayev & Aron Walsh, 2018. "Machine learning for molecular and materials science," Nature, Nature, vol. 559(7715), pages 547-555, July.
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