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Active phase discovery in heterogeneous catalysis via topology-guided sampling and machine learning

Author

Listed:
  • Shisheng Zheng

    (Xiamen University)

  • Xi-Ming Zhang

    (Xiamen University)

  • Heng-Su Liu

    (Xiamen University)

  • Ge-Hao Liang

    (Xiamen University)

  • Si-Wang Zhang

    (Xiamen University)

  • Wentao Zhang

    (Shenzhen Graduate School)

  • Bingxu Wang

    (Shenzhen Graduate School)

  • Jingling Yang

    (Xiamen University)

  • Xian’an Jin

    (Xiamen University)

  • Feng Pan

    (Shenzhen Graduate School)

  • Jian-Feng Li

    (Xiamen University
    Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM))

Abstract

Understanding active phases across interfaces, interphases, and even within the bulk under varying external conditions and environmental species is critical for advancing heterogeneous catalysis. Describing these phases through computational models faces the challenges in the generation and calculation of a vast array of atomic configurations. Here, we present a framework for the automatic and efficient exploration of active phases. This approach utilizes a topology-based algorithm leveraging persistent homology to systematically sample configurations across diverse coordination environments and material morphologies. Simultaneously, efficient machine learning force fields enable rapid computations. We demonstrate the effectiveness of this framework in two systems: hydrogen absorption in Pd, where hydrogen penetrates subsurface layers and the bulk, inducing a “hex” reconstruction critical for CO2 electroreduction, explored through 50,000 sampled configurations; and the oxidation dynamics of Pt clusters, where oxygen incorporation renders the clusters less active during oxygen reduction reactions, investigated through 100,000 sampled configurations. In both cases, the predicted active phases and their impacts on catalytic mechanisms closely align with previous experimental observations, indicating that the proposed strategy can model complex catalytic systems and discovery active phases under specific environmental conditions.

Suggested Citation

  • Shisheng Zheng & Xi-Ming Zhang & Heng-Su Liu & Ge-Hao Liang & Si-Wang Zhang & Wentao Zhang & Bingxu Wang & Jingling Yang & Xian’an Jin & Feng Pan & Jian-Feng Li, 2025. "Active phase discovery in heterogeneous catalysis via topology-guided sampling and machine learning," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-57824-4
    DOI: 10.1038/s41467-025-57824-4
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    References listed on IDEAS

    as
    1. Pushkar G. Ghanekar & Siddharth Deshpande & Jeffrey Greeley, 2022. "Adsorbate chemical environment-based machine learning framework for heterogeneous catalysis," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    2. Jacob Townsend & Cassie Putman Micucci & John H. Hymel & Vasileios Maroulas & Konstantinos D. Vogiatzis, 2020. "Representation of molecular structures with persistent homology for machine learning applications in chemistry," Nature Communications, Nature, vol. 11(1), pages 1-9, December.
    3. Kihoon Bang & Doosun Hong & Youngtae Park & Donghun Kim & Sang Soo Han & Hyuck Mo Lee, 2023. "Machine learning-enabled exploration of the electrochemical stability of real-scale metallic nanoparticles," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    4. Ahmed M. Abdellah & Fatma Ismail & Oliver W. Siig & Jie Yang & Carmen M. Andrei & Liza-Anastasia DiCecco & Amirhossein Rakhsha & Kholoud E. Salem & Kathryn Grandfield & Nabil Bassim & Robert Black & G, 2024. "Impact of palladium/palladium hydride conversion on electrochemical CO2 reduction via in-situ transmission electron microscopy and diffraction," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    5. Benedikt Axel Brandes & Yogeshwaran Krishnan & Fabian Luca Buchauer & Heine Anton Hansen & Johan Hjelm, 2024. "Unifying the ORR and OER with surface oxygen and extracting their intrinsic activities on platinum," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    6. Jacob Townsend & Cassie Putman Micucci & John H. Hymel & Vasileios Maroulas & Konstantinos D. Vogiatzis, 2020. "Author Correction: Representation of molecular structures with persistent homology for machine learning applications in chemistry," Nature Communications, Nature, vol. 11(1), pages 1-1, December.
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