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Cooperative microbial interactions drive spatial segregation in porous environments

Author

Listed:
  • Yichao Wu

    (Huazhong Agricultural University)

  • Chengxia Fu

    (Huazhong Agricultural University)

  • Caroline L. Peacock

    (University of Leeds)

  • Søren J. Sørensen

    (University of Copenhagen)

  • Marc A. Redmile-Gordon

    (Royal Horticultural Society)

  • Ke-Qing Xiao

    (University of Leeds
    Chinese Academy of Sciences)

  • Chunhui Gao

    (Huazhong Agricultural University)

  • Jun Liu

    (Huazhong Agricultural University)

  • Qiaoyun Huang

    (Huazhong Agricultural University)

  • Zixue Li

    (Huazhong University of Science and Technology)

  • Peiyi Song

    (Huazhong University of Science and Technology)

  • Yongguan Zhu

    (Chinese Academy of Sciences
    Institute of Urban Environment, Chinese Academy of Sciences)

  • Jizhong Zhou

    (University of Oklahoma
    Tsinghua University
    Lawrence Berkeley National Laboratory
    University of Oklahoma)

  • Peng Cai

    (Huazhong Agricultural University)

Abstract

The role of microbial interactions and the underlying mechanisms that shape complex biofilm communities are poorly understood. Here we employ a microfluidic chip to represent porous subsurface environments and show that cooperative microbial interactions between free-living and biofilm-forming bacteria trigger active spatial segregation to promote their respective dominance in segregated microhabitats. During initial colonization, free-living and biofilm-forming microbes are segregated from the mixed planktonic inoculum to occupy the ambient fluid and grain surface. Contrary to spatial exclusion through competition, the active spatial segregation is induced by cooperative interactions which improves the fitness of both biofilm and planktonic populations. We further show that free-living Arthrobacter induces the surface colonization by scavenging the biofilm inhibitor, D-amino acids and receives benefits from the public goods secreted by the biofilm-forming strains. Collectively, our results reveal how cooperative microbial interactions may contribute to microbial coexistence in segregated microhabitats and drive subsurface biofilm community succession.

Suggested Citation

  • Yichao Wu & Chengxia Fu & Caroline L. Peacock & Søren J. Sørensen & Marc A. Redmile-Gordon & Ke-Qing Xiao & Chunhui Gao & Jun Liu & Qiaoyun Huang & Zixue Li & Peiyi Song & Yongguan Zhu & Jizhong Zhou , 2023. "Cooperative microbial interactions drive spatial segregation in porous environments," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39991-4
    DOI: 10.1038/s41467-023-39991-4
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    References listed on IDEAS

    as
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    Cited by:

    1. Yuzhen Zhang & Yukmi Cai & Bing Zhang & Yi-Heng P. Job Zhang, 2024. "Spatially structured exchange of metabolites enhances bacterial survival and resilience in biofilms," Nature Communications, Nature, vol. 15(1), pages 1-15, December.

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