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Oncogenic mutations of PIK3CA lead to increased membrane recruitment driven by reorientation of the ABD, p85 and C-terminus

Author

Listed:
  • Meredith L. Jenkins

    (University of Victoria)

  • Harish Ranga-Prasad

    (University of Victoria)

  • Matthew A. H. Parson

    (University of Victoria)

  • Noah J. Harris

    (University of Victoria)

  • Manoj K. Rathinaswamy

    (University of Victoria)

  • John E. Burke

    (University of Victoria
    The University of British Columbia)

Abstract

PIK3CA encoding the phosphoinositide 3-kinase (PI3K) p110α catalytic subunit is frequently mutated in cancer, with mutations occurring widely throughout the primary sequence. The full set of mechanisms underlying how PI3Ks are activated by all oncogenic mutations on membranes are unclear. Using a synergy of biochemical assays and hydrogen deuterium exchange mass spectrometry (HDX-MS), we reveal unique regulatory mechanisms underlying PI3K activation. Engagement of p110α on membranes leads to disengagement of the ABD of p110α from the catalytic core, and the C2 domain from the iSH2 domain of the p85 regulatory subunit. PI3K activation also requires reorientation of the p110α C-terminus, with mutations that alter the inhibited conformation of the C-terminus increasing membrane binding. Mutations at the C-terminus (M1043I/L, H1047R, G1049R, and N1068KLKR) activate p110α through distinct mechanisms, with this having important implications for mutant selective inhibitor development. This work reveals unique mechanisms underlying how PI3K is activated by oncogenic mutations, and explains how double mutants can synergistically increase PI3K activity.

Suggested Citation

  • Meredith L. Jenkins & Harish Ranga-Prasad & Matthew A. H. Parson & Noah J. Harris & Manoj K. Rathinaswamy & John E. Burke, 2023. "Oncogenic mutations of PIK3CA lead to increased membrane recruitment driven by reorientation of the ABD, p85 and C-terminus," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-35789-6
    DOI: 10.1038/s41467-023-35789-6
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    1. Benjamin D. Hopkins & Chantal Pauli & Xing Du & Diana G. Wang & Xiang Li & David Wu & Solomon C. Amadiume & Marcus D. Goncalves & Cindy Hodakoski & Mark R. Lundquist & Rohan Bareja & Yan Ma & Emily M., 2018. "Suppression of insulin feedback enhances the efficacy of PI3K inhibitors," Nature, Nature, vol. 560(7719), pages 499-503, August.
    2. Michael S. Lawrence & Petar Stojanov & Craig H. Mermel & James T. Robinson & Levi A. Garraway & Todd R. Golub & Matthew Meyerson & Stacey B. Gabriel & Eric S. Lander & Gad Getz, 2014. "Discovery and saturation analysis of cancer genes across 21 tumour types," Nature, Nature, vol. 505(7484), pages 495-501, January.
    3. Edward H. Walker & Olga Perisic & Christian Ried & Len Stephens & Roger L. Williams, 1999. "Structural insights into phosphoinositide 3-kinase catalysis and signalling," Nature, Nature, vol. 402(6759), pages 313-320, November.
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