IDEAS home Printed from
MyIDEAS: Log in (now much improved!) to save this article

Variable screening in predicting clinical outcome with high-dimensional microarrays

Listed author(s):
  • Shao, Jun
  • Chow, Shein-Chung
Registered author(s):

    Statistical modeling is an important area of biomarker research of important genes for new drug targets, drug candidate validation, disease diagnoses, personalized treatment, and prediction of clinical outcome of a treatment. A widely adopted technology is the use of microarray data that are typically very high dimensional. After screening chromosomes for relative genes using methods such as quantitative trait locus mapping, there may still be a few thousands of genes related to the clinical outcome of interest. On the other hand, the sample size (the number of subjects) in a clinical study is typically much smaller. Under the assumption that only a few important genes are actually related to the clinical outcome, we propose a variable screening procedure to eliminate genes having negligible effects on the clinical outcome. Once the dimension of microarray data is reduced to a manageable number relative to the sample size, one can select a final set of genes via a well-known variable selection method such as the cross-validation. We establish the asymptotic consistency of the proposed variable screening procedure. Some simulation results are also presented.

    If you experience problems downloading a file, check if you have the proper application to view it first. In case of further problems read the IDEAS help page. Note that these files are not on the IDEAS site. Please be patient as the files may be large.

    File URL:
    Download Restriction: Full text for ScienceDirect subscribers only

    As the access to this document is restricted, you may want to look for a different version under "Related research" (further below) or search for a different version of it.

    Article provided by Elsevier in its journal Journal of Multivariate Analysis.

    Volume (Year): 98 (2007)
    Issue (Month): 8 (September)
    Pages: 1529-1538

    in new window

    Handle: RePEc:eee:jmvana:v:98:y:2007:i:8:p:1529-1538
    Contact details of provider: Web page:

    Order Information: Postal:

    References listed on IDEAS
    Please report citation or reference errors to , or , if you are the registered author of the cited work, log in to your RePEc Author Service profile, click on "citations" and make appropriate adjustments.:

    in new window

    1. J. C. van Houwelingen, 2001. "Shrinkage and Penalized Likelihood as Methods to Improve Predictive Accuracy," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 55(1), pages 17-34.
    Full references (including those not matched with items on IDEAS)

    This item is not listed on Wikipedia, on a reading list or among the top items on IDEAS.

    When requesting a correction, please mention this item's handle: RePEc:eee:jmvana:v:98:y:2007:i:8:p:1529-1538. See general information about how to correct material in RePEc.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: (Dana Niculescu)

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If references are entirely missing, you can add them using this form.

    If the full references list an item that is present in RePEc, but the system did not link to it, you can help with this form.

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your profile, as there may be some citations waiting for confirmation.

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    This information is provided to you by IDEAS at the Research Division of the Federal Reserve Bank of St. Louis using RePEc data.