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Patterns for parameters in simulation models

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  • Kramer-Schadt, Stephanie
  • Revilla, Eloy
  • Wiegand, Thorsten
  • Grimm, Volker

Abstract

Population simulation models are often used in conservation biology to assess human impact on species survival, but have been under heavy critique due to parameterization problems. The general notion is that only models for which parameters were directly assessed from field data can show that a certain process is working, in contrast to using field data to fit models. We would like to provide an update regarding the relationship between simulation model parameterization and the use of field data as ‘pattern’ for revealing ‘structurally realistic’ parameters and processes. ‘Pattern-oriented modelling’ is an inverse modelling technique in ecology that considers the use of multiple field data pattern simultaneously to filter the parameterizations which were successfully tested against all available data on system dynamics. We highlight this technique with an example of our own research and conclude that this approach is especially suitable for models in conservation of rare and elusive species, where data are generally scarce.

Suggested Citation

  • Kramer-Schadt, Stephanie & Revilla, Eloy & Wiegand, Thorsten & Grimm, Volker, 2007. "Patterns for parameters in simulation models," Ecological Modelling, Elsevier, vol. 204(3), pages 553-556.
  • Handle: RePEc:eee:ecomod:v:204:y:2007:i:3:p:553-556
    DOI: 10.1016/j.ecolmodel.2007.01.018
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    1. Piou, Cyril & Prévost, Etienne, 2012. "A demo-genetic individual-based model for Atlantic salmon populations: Model structure, parameterization and sensitivity," Ecological Modelling, Elsevier, vol. 231(C), pages 37-52.
    2. Vincenot, Christian Ernest & Giannino, Francesco & Rietkerk, Max & Moriya, Kazuyuki & Mazzoleni, Stefano, 2011. "Theoretical considerations on the combined use of System Dynamics and individual-based modeling in ecology," Ecological Modelling, Elsevier, vol. 222(1), pages 210-218.
    3. Nicholas R. Magliocca, 2015. "Model-Based Synthesis of Locally Contingent Responses to Global Market Signals," Land, MDPI, vol. 4(3), pages 1-35, September.
    4. Chudzinska, Magda & Dupont, Yoko L. & Nabe-Nielsen, Jacob & Maia, Kate P. & Henriksen, Marie V. & Rasmussen, Claus & Kissling, W. Daniel & Hagen, Melanie & Trøjelsgaard, Kristian, 2020. "Combining the strengths of agent-based modelling and network statistics to understand animal movement and interactions with resources: example from within-patch foraging decisions of bumblebees," Ecological Modelling, Elsevier, vol. 430(C).
    5. Girard, Philippe & Parrott, Lael & Caron, Charles-André & Green, David M., 2015. "Effects of temperature and surface water availability on spatiotemporal dynamics of stream salamanders using pattern-oriented modelling," Ecological Modelling, Elsevier, vol. 296(C), pages 12-23.
    6. Latombe, Guillaume & Parrott, Lael & Fortin, Daniel, 2011. "Levels of emergence in individual based models: Coping with scarcity of data and pattern redundancy," Ecological Modelling, Elsevier, vol. 222(9), pages 1557-1568.
    7. Heymans, Johanna Jacomina & Coll, Marta & Link, Jason S. & Mackinson, Steven & Steenbeek, Jeroen & Walters, Carl & Christensen, Villy, 2016. "Best practice in Ecopath with Ecosim food-web models for ecosystem-based management," Ecological Modelling, Elsevier, vol. 331(C), pages 173-184.
    8. Bonnell, Tyler R. & Sengupta, Raja R. & Chapman, Colin A. & Goldberg, Tony L., 2010. "An agent-based model of red colobus resources and disease dynamics implicates key resource sites as hot spots of disease transmission," Ecological Modelling, Elsevier, vol. 221(20), pages 2491-2500.
    9. Planque, Benjamin & Aarflot, Johanna M. & Buttay, Lucie & Carroll, JoLynn & Fransner, Filippa & Hansen, Cecilie & Husson, Bérengère & Langangen, Øystein & Lindstrøm, Ulf & Pedersen, Torstein & Primice, 2022. "A standard protocol for describing the evaluation of ecological models," Ecological Modelling, Elsevier, vol. 471(C).
    10. Ortega-Cisneros, Kelly & Cochrane, Kevern & Fulton, Elizabeth A., 2017. "An Atlantis model of the southern Benguela upwelling system: Validation, sensitivity analysis and insights into ecosystem functioning," Ecological Modelling, Elsevier, vol. 355(C), pages 49-63.
    11. Turley, Marianne C. & Ford, E. David, 2009. "Definition and calculation of uncertainty in ecological process models," Ecological Modelling, Elsevier, vol. 220(17), pages 1968-1983.
    12. Jakoby, Oliver & Grimm, Volker & Frank, Karin, 2014. "Pattern-oriented parameterization of general models for ecological application: Towards realistic evaluations of management approaches," Ecological Modelling, Elsevier, vol. 275(C), pages 78-88.
    13. Bauduin, Sarah & McIntire, Eliot & St-Laurent, Martin-Hugues & Cumming, Steve, 2016. "Overcoming challenges of sparse telemetry data to estimate caribou movement," Ecological Modelling, Elsevier, vol. 335(C), pages 24-34.
    14. Chudzinska, Magda & Nabe-Nielsen, Jacob & Smout, Sophie & Aarts, Geert & Brasseur, Sophie & Graham, Isla & Thompson, Paul & McConnell, Bernie, 2021. "AgentSeal: Agent-based model describing movement of marine central-place foragers," Ecological Modelling, Elsevier, vol. 440(C).
    15. Topping, Christopher John & Høye, Toke Thomas & Odderskær, Peter & Aebischer, Nicholas J., 2010. "A pattern-oriented modelling approach to simulating populations of grey partridge," Ecological Modelling, Elsevier, vol. 221(5), pages 729-737.
    16. Perryman, Holly A. & Kaplan, Isaac C. & Blanchard, Julia L. & Fay, Gavin & Gaichas, Sarah K. & McGregor, Vidette L. & Morzaria-Luna, Hem Nalini & Porobic, Javier & Townsend, Howard & Fulton, Elizabeth, 2023. "Atlantis Ecosystem Model Summit 2022: Report from a workshop," Ecological Modelling, Elsevier, vol. 483(C).
    17. Piou, Cyril & Berger, Uta & Grimm, Volker, 2009. "Proposing an information criterion for individual-based models developed in a pattern-oriented modelling framework," Ecological Modelling, Elsevier, vol. 220(17), pages 1957-1967.
    18. Pais, Miguel Pessanha & Cabral, Henrique N., 2017. "Fish behaviour effects on the accuracy and precision of underwater visual census surveys. A virtual ecologist approach using an individual-based model," Ecological Modelling, Elsevier, vol. 346(C), pages 58-69.

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