IDEAS home Printed from https://ideas.repec.org/a/bla/biomet/v76y2020i2p578-587.html
   My bibliography  Save this article

Predictively consistent prior effective sample sizes

Author

Listed:
  • Beat Neuenschwander
  • Sebastian Weber
  • Heinz Schmidli
  • Anthony O'Hagan

Abstract

Determining the sample size of an experiment can be challenging, even more so when incorporating external information via a prior distribution. Such information is increasingly used to reduce the size of the control group in randomized clinical trials. Knowing the amount of prior information, expressed as an equivalent prior effective sample size (ESS), clearly facilitates trial designs. Various methods to obtain a prior's ESS have been proposed recently. They have been justified by the fact that they give the standard ESS for one‐parameter exponential families. However, despite being based on similar information‐based metrics, they may lead to surprisingly different ESS for nonconjugate settings, which complicates many designs with prior information. We show that current methods fail a basic predictive consistency criterion, which requires the expected posterior‐predictive ESS for a sample of size N to be the sum of the prior ESS and N. The expected local‐information‐ratio ESS is introduced and shown to be predictively consistent. It corrects the ESS of current methods, as shown for normally distributed data with a heavy‐tailed Student‐t prior and exponential data with a generalized Gamma prior. Finally, two applications are discussed: the prior ESS for the control group derived from historical data and the posterior ESS for hierarchical subgroup analyses.

Suggested Citation

  • Beat Neuenschwander & Sebastian Weber & Heinz Schmidli & Anthony O'Hagan, 2020. "Predictively consistent prior effective sample sizes," Biometrics, The International Biometric Society, vol. 76(2), pages 578-587, June.
  • Handle: RePEc:bla:biomet:v:76:y:2020:i:2:p:578-587
    DOI: 10.1111/biom.13252
    as

    Download full text from publisher

    File URL: https://doi.org/10.1111/biom.13252
    Download Restriction: no

    File URL: https://libkey.io/10.1111/biom.13252?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Heinz Schmidli & Sandro Gsteiger & Satrajit Roychoudhury & Anthony O'Hagan & David Spiegelhalter & Beat Neuenschwander, 2014. "Robust meta-analytic-predictive priors in clinical trials with historical control information," Biometrics, The International Biometric Society, vol. 70(4), pages 1023-1032, December.
    2. Satoshi Morita & Peter F. Thall & Peter Müller, 2008. "Determining the Effective Sample Size of a Parametric Prior," Biometrics, The International Biometric Society, vol. 64(2), pages 595-602, June.
    3. L. G. Leon-Novelo & B. Nebiyou Bekele & P. Müller & F. Quintana & K. Wathen, 2012. "Borrowing Strength with Nonexchangeable Priors over Subpopulations," Biometrics, The International Biometric Society, vol. 68(2), pages 550-558, June.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Danila Azzolina & Paola Berchialla & Silvia Bressan & Liviana Da Dalt & Dario Gregori & Ileana Baldi, 2022. "A Bayesian Sample Size Estimation Procedure Based on a B-Splines Semiparametric Elicitation Method," IJERPH, MDPI, vol. 19(21), pages 1-15, October.
    2. Meghna Bose & Jean‐François Angers & Atanu Biswas, 2023. "Prior effective sample size in phase II clinical trials with mixed binary and continuous responses," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 77(2), pages 233-248, May.
    3. Haiyan Zheng & Thomas Jaki & James M.S. Wason, 2023. "Bayesian sample size determination using commensurate priors to leverage preexperimental data," Biometrics, The International Biometric Society, vol. 79(2), pages 669-683, June.
    4. Sidi Wang & Kelley M. Kidwell & Satrajit Roychoudhury, 2023. "Dynamic enrichment of Bayesian small‐sample, sequential, multiple assignment randomized trial design using natural history data: a case study from Duchenne muscular dystrophy," Biometrics, The International Biometric Society, vol. 79(4), pages 3612-3623, December.
    5. Liyun Jiang & Lei Nie & Ying Yuan, 2023. "Elastic priors to dynamically borrow information from historical data in clinical trials," Biometrics, The International Biometric Society, vol. 79(1), pages 49-60, March.
    6. Atanu Biswas & Jean‐François Angers, 2020. "Discussion on “Predictively consistent prior effective sample sizes,” by Beat Neuenschwander, Sebastian Weber, Heinz Schmidli, and Anthony O'Hagan," Biometrics, The International Biometric Society, vol. 76(2), pages 591-594, June.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Heinz Schmidli & Sandro Gsteiger & Satrajit Roychoudhury & Anthony O'Hagan & David Spiegelhalter & Beat Neuenschwander, 2014. "Robust meta-analytic-predictive priors in clinical trials with historical control information," Biometrics, The International Biometric Society, vol. 70(4), pages 1023-1032, December.
    2. Egidi, Leonardo, 2022. "Effective sample size for a mixture prior," Statistics & Probability Letters, Elsevier, vol. 183(C).
    3. Schmidli, Heinz & Neuenschwander, Beat & Friede, Tim, 2017. "Meta-analytic-predictive use of historical variance data for the design and analysis of clinical trials," Computational Statistics & Data Analysis, Elsevier, vol. 113(C), pages 100-110.
    4. David Kaplan & Jianshen Chen & Sinan Yavuz & Weicong Lyu, 2023. "Bayesian Dynamic Borrowing of Historical Information with Applications to the Analysis of Large-Scale Assessments," Psychometrika, Springer;The Psychometric Society, vol. 88(1), pages 1-30, March.
    5. Xu, Ganggang & Zhu, Huirong & Lee, J. Jack, 2020. "Borrowing strength and borrowing index for Bayesian hierarchical models," Computational Statistics & Data Analysis, Elsevier, vol. 144(C).
    6. Moreno Ursino & Nigel Stallard, 2021. "Bayesian Approaches for Confirmatory Trials in Rare Diseases: Opportunities and Challenges," IJERPH, MDPI, vol. 18(3), pages 1-9, January.
    7. Peng Yang & Yuansong Zhao & Lei Nie & Jonathon Vallejo & Ying Yuan, 2023. "SAM: Self‐adapting mixture prior to dynamically borrow information from historical data in clinical trials," Biometrics, The International Biometric Society, vol. 79(4), pages 2857-2868, December.
    8. Roland Brown & Yingling Fan & Kirti Das & Julian Wolfson, 2021. "Iterated multisource exchangeability models for individualized inference with an application to mobile sensor data," Biometrics, The International Biometric Society, vol. 77(2), pages 401-412, June.
    9. Matthew Reimherr & Xiao‐Li Meng & Dan L. Nicolae, 2021. "Prior sample size extensions for assessing prior impact and prior‐likelihood discordance," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 83(3), pages 413-437, July.
    10. Thomas A. Murray & Peter F. Thall & Ying Yuan & Sarah McAvoy & Daniel R. Gomez, 2017. "Robust Treatment Comparison Based on Utilities of Semi-Competing Risks in Non-Small-Cell Lung Cancer," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(517), pages 11-23, January.
    11. Wenlin Yuan & Ming-Hui Chen & John Zhong, 2022. "Flexible Conditional Borrowing Approaches for Leveraging Historical Data in the Bayesian Design of Superiority Trials," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 14(2), pages 197-215, July.
    12. Emma Gerard & Sarah Zohar & Hoai‐Thu Thai & Christelle Lorenzato & Marie‐Karelle Riviere & Moreno Ursino, 2022. "Bayesian dose regimen assessment in early phase oncology incorporating pharmacokinetics and pharmacodynamics," Biometrics, The International Biometric Society, vol. 78(1), pages 300-312, March.
    13. Dan J. Spitzner, 2023. "Calibrated Bayes factors under flexible priors," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 32(3), pages 733-767, September.
    14. Ghaderinezhad, Fatemeh & Ley, Christophe & Serrien, Ben, 2022. "The Wasserstein Impact Measure (WIM): A practical tool for quantifying prior impact in Bayesian statistics," Computational Statistics & Data Analysis, Elsevier, vol. 174(C).
    15. Qingyang Liu & Junxian Geng & Frank Fleischer & Qiqi Deng, 2022. "Efficacy-Driven Dose Finding with Toxicity Control in Phase I Oncology Studies," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 14(3), pages 413-431, December.
    16. Adam Fleischhacker & Pak-Wing Fok & Mokshay Madiman & Nan Wu, 2023. "A Closed-Form EVSI Expression for a Multinomial Data-Generating Process," Decision Analysis, INFORMS, vol. 20(1), pages 73-84, March.
    17. Maura Mezzetti & Daniele Borzelli & Andrea d’Avella, 2022. "A Bayesian approach to model individual differences and to partition individuals: case studies in growth and learning curves," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 31(5), pages 1245-1271, December.
    18. Stavros Nikolakopoulos & Ingeborg van der Tweel & Kit C. B. Roes, 2018. "Dynamic borrowing through empirical power priors that control type I error," Biometrics, The International Biometric Society, vol. 74(3), pages 874-880, September.
    19. Jingjing Ye & Gregory Reaman, 2022. "Improving Early Futility Determination by Learning from External Data in Pediatric Cancer Clinical Trials," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 14(2), pages 337-351, July.
    20. Lanju Zhang & Zailong Wang & Li Wang & Lu Cui & Jeremy Sokolove & Ivan Chan, 2022. "A Simple Approach to Incorporating Historical Control Data in Clinical Trial Design and Analysis," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 14(2), pages 216-236, July.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bla:biomet:v:76:y:2020:i:2:p:578-587. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Wiley Content Delivery (email available below). General contact details of provider: http://www.blackwellpublishing.com/journal.asp?ref=0006-341X .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.