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Obtaining optimal cutoff values for tree classifiers using multiple biomarkers

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  • Yuxin Zhu
  • Mei‐Cheng Wang

Abstract

In biomedical practices, multiple biomarkers are often combined using a prespecified classification rule with tree structure for diagnostic decisions. The classification structure and cutoff point at each node of a tree are usually chosen on an ad hoc basis, depending on decision makers' experience. There is a lack of analytical approaches that lead to optimal prediction performance, and that guide the choice of optimal cutoff points in a pre‐specified classification tree. In this paper, we propose to search for and estimate the optimal decision rule through an approach of rank correlation maximization. The proposed method is flexible, theoretically sound, and computationally feasible when many biomarkers are available for classification or prediction. Using the proposed approach, for a prespecified tree‐structured classification rule, we can guide the choice of optimal cutoff points at tree nodes and estimate optimal prediction performance from multiple biomarkers combined.

Suggested Citation

  • Yuxin Zhu & Mei‐Cheng Wang, 2022. "Obtaining optimal cutoff values for tree classifiers using multiple biomarkers," Biometrics, The International Biometric Society, vol. 78(1), pages 128-140, March.
  • Handle: RePEc:bla:biomet:v:78:y:2022:i:1:p:128-140
    DOI: 10.1111/biom.13409
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    References listed on IDEAS

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    1. Margaret Sullivan Pepe & Tianxi Cai & Gary Longton, 2006. "Combining Predictors for Classification Using the Area under the Receiver Operating Characteristic Curve," Biometrics, The International Biometric Society, vol. 62(1), pages 221-229, March.
    2. Stuart G. Baker, 2000. "Identifying Combinations of Cancer Markers for Further Study as Triggers of Early Intervention," Biometrics, The International Biometric Society, vol. 56(4), pages 1082-1087, December.
    3. Han, Aaron K., 1987. "Non-parametric analysis of a generalized regression model : The maximum rank correlation estimator," Journal of Econometrics, Elsevier, vol. 35(2-3), pages 303-316, July.
    4. Jin, Hua & Lu, Ying, 2009. "The ROC region of a regression tree," Statistics & Probability Letters, Elsevier, vol. 79(7), pages 936-942, April.
    5. Horowitz, Joel L, 1992. "A Smoothed Maximum Score Estimator for the Binary Response Model," Econometrica, Econometric Society, vol. 60(3), pages 505-531, May.
    6. Mei-Cheng Wang & Shanshan Li, 2012. "Bivariate Marker Measurements and ROC Analysis," Biometrics, The International Biometric Society, vol. 68(4), pages 1207-1218, December.
    7. Martin W. McIntosh & Margaret Sullivan Pepe, 2002. "Combining Several Screening Tests: Optimality of the Risk Score," Biometrics, The International Biometric Society, vol. 58(3), pages 657-664, September.
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