IDEAS home Printed from https://ideas.repec.org/a/spr/aistmt/v74y2022i1d10.1007_s10463-021-00794-3.html
   My bibliography  Save this article

Broken adaptive ridge regression for right-censored survival data

Author

Listed:
  • Zhihua Sun

    (Ocean University of China)

  • Yi Liu

    (Ocean University of China)

  • Kani Chen

    (Hong Kong University of Science and Technology)

  • Gang Li

    (University of California)

Abstract

Broken adaptive ridge (BAR) is a computationally scalable surrogate to $$L_0$$ L 0 -penalized regression, which involves iteratively performing reweighted $$L_2$$ L 2 penalized regressions and enjoys some appealing properties of both $$L_0$$ L 0 and $$L_2$$ L 2 penalized regressions while avoiding some of their limitations. In this paper, we extend the BAR method to the semi-parametric accelerated failure time (AFT) model for right-censored survival data. Specifically, we propose a censored BAR (CBAR) estimator by applying the BAR algorithm to the Leurgan’s synthetic data and show that the resulting CBAR estimator is consistent for variable selection, possesses an oracle property for parameter estimation and enjoys a grouping property for highly correlation covariates. Both low- and high-dimensional covariates are considered. The effectiveness of our method is demonstrated and compared with some popular penalization methods using simulations. Real data illustrations are provided on a diffuse large-B-cell lymphoma data and a glioblastoma multiforme data.

Suggested Citation

  • Zhihua Sun & Yi Liu & Kani Chen & Gang Li, 2022. "Broken adaptive ridge regression for right-censored survival data," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 74(1), pages 69-91, February.
  • Handle: RePEc:spr:aistmt:v:74:y:2022:i:1:d:10.1007_s10463-021-00794-3
    DOI: 10.1007/s10463-021-00794-3
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s10463-021-00794-3
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s10463-021-00794-3?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
    2. Jiahua Chen & Zehua Chen, 2008. "Extended Bayesian information criteria for model selection with large model spaces," Biometrika, Biometrika Trust, vol. 95(3), pages 759-771.
    3. Johnson, Brent A. & Lin, D.Y. & Zeng, Donglin, 2008. "Penalized Estimating Functions and Variable Selection in Semiparametric Regression Models," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 672-680, June.
    4. Stute, W., 1993. "Consistent Estimation Under Random Censorship When Covariables Are Present," Journal of Multivariate Analysis, Elsevier, vol. 45(1), pages 89-103, April.
    5. Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2010. "Regularization Paths for Generalized Linear Models via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 33(i01).
    6. Susmita Datta & Jennifer Le-Rademacher & Somnath Datta, 2007. "Predicting Patient Survival from Microarray Data by Accelerated Failure Time Modeling Using Partial Least Squares and LASSO," Biometrics, The International Biometric Society, vol. 63(1), pages 259-271, March.
    7. Hengjian Cui & Runze Li & Wei Zhong, 2015. "Model-Free Feature Screening for Ultrahigh Dimensional Discriminant Analysis," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(510), pages 630-641, June.
    8. Jianqing Fan & Jinchi Lv, 2008. "Sure independence screening for ultrahigh dimensional feature space," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(5), pages 849-911, November.
    9. Jian Huang & Shuangge Ma & Huiliang Xie, 2006. "Regularized Estimation in the Accelerated Failure Time Model with High-Dimensional Covariates," Biometrics, The International Biometric Society, vol. 62(3), pages 813-820, September.
    10. Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
    11. Dai, Linlin & Chen, Kani & Sun, Zhihua & Liu, Zhenqiu & Li, Gang, 2018. "Broken adaptive ridge regression and its asymptotic properties," Journal of Multivariate Analysis, Elsevier, vol. 168(C), pages 334-351.
    12. Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
    13. Xiaotong Shen & Wei Pan & Yunzhang Zhu, 2012. "Likelihood-Based Selection and Sharp Parameter Estimation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(497), pages 223-232, March.
    14. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    15. T. Cai & J. Huang & L. Tian, 2009. "Regularized Estimation for the Accelerated Failure Time Model," Biometrics, The International Biometric Society, vol. 65(2), pages 394-404, June.
    16. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
    17. Sijian Wang & Bin Nan & Ji Zhu & David G. Beer, 2008. "Doubly Penalized Buckley–James Method for Survival Data with High-Dimensional Covariates," Biometrics, The International Biometric Society, vol. 64(1), pages 132-140, March.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Wang Zhu & Wang C.Y., 2010. "Buckley-James Boosting for Survival Analysis with High-Dimensional Biomarker Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-33, June.
    2. Dai, Linlin & Chen, Kani & Sun, Zhihua & Liu, Zhenqiu & Li, Gang, 2018. "Broken adaptive ridge regression and its asymptotic properties," Journal of Multivariate Analysis, Elsevier, vol. 168(C), pages 334-351.
    3. Loann David Denis Desboulets, 2018. "A Review on Variable Selection in Regression Analysis," Econometrics, MDPI, vol. 6(4), pages 1-27, November.
    4. T. Cai & J. Huang & L. Tian, 2009. "Regularized Estimation for the Accelerated Failure Time Model," Biometrics, The International Biometric Society, vol. 65(2), pages 394-404, June.
    5. Liming Wang & Xingxiang Li & Xiaoqing Wang & Peng Lai, 2022. "Unified mean-variance feature screening for ultrahigh-dimensional regression," Computational Statistics, Springer, vol. 37(4), pages 1887-1918, September.
    6. Engler David & Li Yi, 2009. "Survival Analysis with High-Dimensional Covariates: An Application in Microarray Studies," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-24, February.
    7. She, Yiyuan, 2012. "An iterative algorithm for fitting nonconvex penalized generalized linear models with grouped predictors," Computational Statistics & Data Analysis, Elsevier, vol. 56(10), pages 2976-2990.
    8. Wei Sun & Lexin Li, 2012. "Multiple Loci Mapping via Model-free Variable Selection," Biometrics, The International Biometric Society, vol. 68(1), pages 12-22, March.
    9. Yang, Yuan & McMahan, Christopher S. & Wang, Yu-Bo & Ouyang, Yuyuan, 2024. "Estimation of l0 norm penalized models: A statistical treatment," Computational Statistics & Data Analysis, Elsevier, vol. 192(C).
    10. Zhixuan Fu & Chirag R. Parikh & Bingqing Zhou, 2017. "Penalized variable selection in competing risks regression," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 23(3), pages 353-376, July.
    11. Xiangyu Wang & Chenlei Leng, 2016. "High dimensional ordinary least squares projection for screening variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 78(3), pages 589-611, June.
    12. Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
    13. Yize Zhao & Matthias Chung & Brent A. Johnson & Carlos S. Moreno & Qi Long, 2016. "Hierarchical Feature Selection Incorporating Known and Novel Biological Information: Identifying Genomic Features Related to Prostate Cancer Recurrence," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(516), pages 1427-1439, October.
    14. Peter Bühlmann & Jacopo Mandozzi, 2014. "High-dimensional variable screening and bias in subsequent inference, with an empirical comparison," Computational Statistics, Springer, vol. 29(3), pages 407-430, June.
    15. Capanu, Marinela & Giurcanu, Mihai & Begg, Colin B. & Gönen, Mithat, 2023. "Subsampling based variable selection for generalized linear models," Computational Statistics & Data Analysis, Elsevier, vol. 184(C).
    16. Jingxuan Luo & Lili Yue & Gaorong Li, 2023. "Overview of High-Dimensional Measurement Error Regression Models," Mathematics, MDPI, vol. 11(14), pages 1-22, July.
    17. Takumi Saegusa & Tianzhou Ma & Gang Li & Ying Qing Chen & Mei-Ling Ting Lee, 2020. "Variable Selection in Threshold Regression Model with Applications to HIV Drug Adherence Data," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 12(3), pages 376-398, December.
    18. Zanhua Yin, 2020. "Variable selection for sparse logistic regression," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 83(7), pages 821-836, October.
    19. Qingliang Fan & Yaqian Wu, 2020. "Endogenous Treatment Effect Estimation with some Invalid and Irrelevant Instruments," Papers 2006.14998, arXiv.org.
    20. Ricardo P. Masini & Marcelo C. Medeiros & Eduardo F. Mendes, 2023. "Machine learning advances for time series forecasting," Journal of Economic Surveys, Wiley Blackwell, vol. 37(1), pages 76-111, February.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:aistmt:v:74:y:2022:i:1:d:10.1007_s10463-021-00794-3. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.