IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0079315.html
   My bibliography  Save this article

Predictive Modeling for Diagnostic Tests with High Specificity, but Low Sensitivity: A Study of the Glycerol Test in Patients with Suspected Menière’s Disease

Author

Listed:
  • Bernd Lütkenhöner
  • Türker Basel

Abstract

A high specificity does not ensure that the expected benefit of a diagnostic test outweighs its cost. Problems arise, in particular, when the investigation is expensive, the prevalence of a positive test result is relatively small for the candidate patients, and the sensitivity of the test is low so that the information provided by a negative result is virtually negligible. The consequence may be that a potentially useful test does not gain broader acceptance. Here we show how predictive modeling can help to identify patients for whom the ratio of expected benefit and cost reaches an acceptable level so that testing these patients is reasonable even though testing all patients might be considered wasteful. Our application example is based on a retrospective study of the glycerol test, which is used to corroborate a suspected diagnosis of Menière’s disease. Using the pretest hearing thresholds at up to 10 frequencies, predictions were made by K-nearest neighbor classification or logistic regression. Both methods estimate, based on results from previous patients, the posterior probability that performing the considered test in a new patient will have a positive outcome. The quality of the prediction was evaluated using leave-one-out cross-validation, making various assumptions about the costs and benefits of testing. With reference to all 356 cases, the probability of a positive test result was almost 0.4. For subpopulations selected by K-nearest neighbor classification, which was clearly superior to logistic regression, this probability could be increased up to about 0.6. Thus, the odds of a positive test result were more than doubled.

Suggested Citation

  • Bernd Lütkenhöner & Türker Basel, 2013. "Predictive Modeling for Diagnostic Tests with High Specificity, but Low Sensitivity: A Study of the Glycerol Test in Patients with Suspected Menière’s Disease," PLOS ONE, Public Library of Science, vol. 8(11), pages 1-12, November.
  • Handle: RePEc:plo:pone00:0079315
    DOI: 10.1371/journal.pone.0079315
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0079315
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0079315&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0079315?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. David A. Asch & James P. Patton & John C. Hershey, 1990. "Knowing for the Sake of Knowing," Medical Decision Making, , vol. 10(1), pages 47-57, February.
    2. Jørgen Hilden, 1991. "The Area under the ROC Curve and Its Competitors," Medical Decision Making, , vol. 11(2), pages 95-101, June.
    3. Andrew J. Vickers & Elena B. Elkin, 2006. "Decision Curve Analysis: A Novel Method for Evaluating Prediction Models," Medical Decision Making, , vol. 26(6), pages 565-574, November.
    4. Buttrey, Samuel E., 1998. "Nearest-neighbor classification with categorical variables," Computational Statistics & Data Analysis, Elsevier, vol. 28(2), pages 157-169, August.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Ja Hyeon Ku & Myong Kim & Seok-Soo Byun & Hyeon Jeong & Cheol Kwak & Hyeon Hoe Kim & Sang Eun Lee, 2015. "External Validation of Models for Prediction of Lymph Node Metastasis in Urothelial Carcinoma of the Bladder," PLOS ONE, Public Library of Science, vol. 10(10), pages 1-10, October.
    2. Iacus, Stefano M. & Porro, Giuseppe, 2007. "Missing data imputation, matching and other applications of random recursive partitioning," Computational Statistics & Data Analysis, Elsevier, vol. 52(2), pages 773-789, October.
    3. Félix L. Morales & Feihong Xu & Hyojun Ada Lee & Helio Tejedor Navarro & Meagan A. Bechel & Eryn L. Cameron & Jesse Kelso & Curtis H. Weiss & Luís A. Nunes Amaral, 2025. "Open-source computational pipeline flags instances of acute respiratory distress syndrome in mechanically ventilated adult patients," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
    4. Lin Lu & Laurent Dercle & Binsheng Zhao & Lawrence H. Schwartz, 2021. "Deep learning for the prediction of early on-treatment response in metastatic colorectal cancer from serial medical imaging," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    5. Yiwang Zhou & Peter X.K. Song & Haoda Fu, 2021. "Net benefit index: Assessing the influence of a biomarker for individualized treatment rules," Biometrics, The International Biometric Society, vol. 77(4), pages 1254-1264, December.
    6. Arthur De Sá Ferreira & Ney Meziat-Filho & Ana Paula Antunes Ferreira, 2021. "Double threshold receiver operating characteristic plot for three-modal continuous predictors," Computational Statistics, Springer, vol. 36(3), pages 2231-2245, September.
    7. Jing Sun & Yue Liu & Jianhui Zhao & Bin Lu & Siyun Zhou & Wei Lu & Jingsun Wei & Yeting Hu & Xiangxing Kong & Junshun Gao & Hong Guan & Junli Gao & Qian Xiao & Xue Li, 2024. "Plasma proteomic and polygenic profiling improve risk stratification and personalized screening for colorectal cancer," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    8. Shamil D. Cooray & Lihini A. Wijeyaratne & Georgia Soldatos & John Allotey & Jacqueline A. Boyle & Helena J. Teede, 2020. "The Unrealised Potential for Predicting Pregnancy Complications in Women with Gestational Diabetes: A Systematic Review and Critical Appraisal," IJERPH, MDPI, vol. 17(9), pages 1-20, April.
    9. Khushal Arjan & Lui G Forni & Richard M Venn & David Hunt & Luke Eliot Hodgson, 2021. "Clinical decision-making in older adults following emergency admission to hospital. Derivation and validation of a risk stratification score: OPERA," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-12, March.
    10. Christian Bock & Joan Elias Walter & Bastian Rieck & Ivo Strebel & Klara Rumora & Ibrahim Schaefer & Michael J. Zellweger & Karsten Borgwardt & Christian Müller, 2024. "Enhancing the diagnosis of functionally relevant coronary artery disease with machine learning," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    11. Tracey L. Marsh & Holly Janes & Margaret S. Pepe, 2020. "Statistical inference for net benefit measures in biomarker validation studies," Biometrics, The International Biometric Society, vol. 76(3), pages 843-852, September.
    12. Chang Wook Jeong & Sangchul Lee & Jin-Woo Jung & Byung Ki Lee & Seong Jin Jeong & Sung Kyu Hong & Seok-Soo Byun & Sang Eun Lee, 2014. "Mobile Application-Based Seoul National University Prostate Cancer Risk Calculator: Development, Validation, and Comparative Analysis with Two Western Risk Calculators in Korean Men," PLOS ONE, Public Library of Science, vol. 9(4), pages 1-7, April.
    13. Xin Luo & Jijia Sun & Hong Pan & Dian Zhou & Ping Huang & Jingjing Tang & Rong Shi & Hong Ye & Ying Zhao & An Zhang, 2023. "Establishment and health management application of a prediction model for high-risk complication combination of type 2 diabetes mellitus based on data mining," PLOS ONE, Public Library of Science, vol. 18(8), pages 1-18, August.
    14. Yanqing Wang & Yingqi Zhao & Yingye Zheng, 2022. "Targeted Search for Individualized Clinical Decision Rules to Optimize Clinical Outcomes," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 14(3), pages 564-581, December.
    15. Tae Yoon Lee & Paul Gustafson & Mohsen Sadatsafavi, 2023. "Closed-Form Solution of the Unit Normal Loss Integral in 2 Dimensions, with Application in Value-of-Information Analysis," Medical Decision Making, , vol. 43(5), pages 621-626, July.
    16. Baker Stuart G. & Van Calster Ben & Steyerberg Ewout W., 2012. "Evaluating a New Marker for Risk Prediction Using the Test Tradeoff: An Update," The International Journal of Biostatistics, De Gruyter, vol. 8(1), pages 1-37, March.
    17. Kevin Sandeman & Juho T Eineluoto & Joona Pohjonen & Andrew Erickson & Tuomas P Kilpeläinen & Petrus Järvinen & Henrikki Santti & Anssi Petas & Mika Matikainen & Suvi Marjasuo & Anu Kenttämies & Tuoma, 2020. "Prostate MRI added to CAPRA, MSKCC and Partin cancer nomograms significantly enhances the prediction of adverse findings and biochemical recurrence after radical prostatectomy," PLOS ONE, Public Library of Science, vol. 15(7), pages 1-14, July.
    18. Filip Emil Schjerven & Frank Lindseth & Ingelin Steinsland, 2024. "Prognostic risk models for incident hypertension: A PRISMA systematic review and meta-analysis," PLOS ONE, Public Library of Science, vol. 19(3), pages 1-29, March.
    19. Pahalage Dhanushka Sandaruwan & Champi Thusangi Wannige, 2021. "An improved deep learning model for hierarchical classification of protein families," PLOS ONE, Public Library of Science, vol. 16(10), pages 1-15, October.
    20. R. M. Pfeiffer & M. H. Gail, 2011. "Two Criteria for Evaluating Risk Prediction Models," Biometrics, The International Biometric Society, vol. 67(3), pages 1057-1065, September.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0079315. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.