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Linking structure and activity in nonlinear spiking networks

Author

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  • Gabriel Koch Ocker
  • Krešimir Josić
  • Eric Shea-Brown
  • Michael A Buice

Abstract

Recent experimental advances are producing an avalanche of data on both neural connectivity and neural activity. To take full advantage of these two emerging datasets we need a framework that links them, revealing how collective neural activity arises from the structure of neural connectivity and intrinsic neural dynamics. This problem of structure-driven activity has drawn major interest in computational neuroscience. Existing methods for relating activity and architecture in spiking networks rely on linearizing activity around a central operating point and thus fail to capture the nonlinear responses of individual neurons that are the hallmark of neural information processing. Here, we overcome this limitation and present a new relationship between connectivity and activity in networks of nonlinear spiking neurons by developing a diagrammatic fluctuation expansion based on statistical field theory. We explicitly show how recurrent network structure produces pairwise and higher-order correlated activity, and how nonlinearities impact the networks’ spiking activity. Our findings open new avenues to investigating how single-neuron nonlinearities—including those of different cell types—combine with connectivity to shape population activity and function.Author summary: Neuronal networks, like many biological systems, exhibit variable activity. This activity is shaped by both the underlying biology of the component neurons and the structure of their interactions. How can we combine knowledge of these two things—that is, models of individual neurons and of their interactions—to predict the statistics of single- and multi-neuron activity? Current approaches rely on linearizing neural activity around a stationary state. In the face of neural nonlinearities, however, these linear methods can fail to predict spiking statistics and even fail to correctly predict whether activity is stable or pathological. Here, we show how to calculate any spike train cumulant in a broad class of models, while systematically accounting for nonlinear effects. We then study a fundamental effect of nonlinear input-rate transfer–coupling between different orders of spiking statistic–and how this depends on single-neuron and network properties.

Suggested Citation

  • Gabriel Koch Ocker & Krešimir Josić & Eric Shea-Brown & Michael A Buice, 2017. "Linking structure and activity in nonlinear spiking networks," PLOS Computational Biology, Public Library of Science, vol. 13(6), pages 1-47, June.
  • Handle: RePEc:plo:pcbi00:1005583
    DOI: 10.1371/journal.pcbi.1005583
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    1. Omri Harish & David Hansel, 2015. "Asynchronous Rate Chaos in Spiking Neuronal Circuits," PLOS Computational Biology, Public Library of Science, vol. 11(7), pages 1-38, July.
    2. Volker Pernice & Benjamin Staude & Stefano Cardanobile & Stefan Rotter, 2011. "How Structure Determines Correlations in Neuronal Networks," PLOS Computational Biology, Public Library of Science, vol. 7(5), pages 1-14, May.
    3. Yumiko Yoshimura & Jami L. M. Dantzker & Edward M. Callaway, 2005. "Excitatory cortical neurons form fine-scale functional networks," Nature, Nature, vol. 433(7028), pages 868-873, February.
    4. Wei-Chung Allen Lee & Vincent Bonin & Michael Reed & Brett J. Graham & Greg Hood & Katie Glattfelder & R. Clay Reid, 2016. "Anatomy and function of an excitatory network in the visual cortex," Nature, Nature, vol. 532(7599), pages 370-374, April.
    5. Stojan Jovanović & Stefan Rotter, 2016. "Interplay between Graph Topology and Correlations of Third Order in Spiking Neuronal Networks," PLOS Computational Biology, Public Library of Science, vol. 12(6), pages 1-28, June.
    6. A. Saichev & D. Sornette, 2011. "Generating functions and stability study of multivariate self-excited epidemic processes," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 83(2), pages 271-282, September.
    7. W. Martin Usrey & John B. Reppas & R. Clay Reid, 1998. "Paired-spike interactions and synaptic efficacy of retinal inputs to the thalamus," Nature, Nature, vol. 395(6700), pages 384-387, September.
    8. Ramakrishnan Iyer & Vilas Menon & Michael Buice & Christof Koch & Stefan Mihalas, 2013. "The Influence of Synaptic Weight Distribution on Neuronal Population Dynamics," PLOS Computational Biology, Public Library of Science, vol. 9(10), pages 1-16, October.
    9. Gabriel Koch Ocker & Ashok Litwin-Kumar & Brent Doiron, 2015. "Self-Organization of Microcircuits in Networks of Spiking Neurons with Plastic Synapses," PLOS Computational Biology, Public Library of Science, vol. 11(8), pages 1-40, August.
    10. Markus Diesmann & Marc-Oliver Gewaltig & Ad Aertsen, 1999. "Stable propagation of synchronous spiking in cortical neural networks," Nature, Nature, vol. 402(6761), pages 529-533, December.
    11. James Trousdale & Yu Hu & Eric Shea-Brown & Krešimir Josić, 2012. "Impact of Network Structure and Cellular Response on Spike Time Correlations," PLOS Computational Biology, Public Library of Science, vol. 8(3), pages 1-15, March.
    12. Jaime de la Rocha & Brent Doiron & Eric Shea-Brown & Krešimir Josić & Alex Reyes, 2007. "Correlation between neural spike trains increases with firing rate," Nature, Nature, vol. 448(7155), pages 802-806, August.
    13. Lee Cossell & Maria Florencia Iacaruso & Dylan R. Muir & Rachael Houlton & Elie N. Sader & Ho Ko & Sonja B. Hofer & Thomas D. Mrsic-Flogel, 2015. "Functional organization of excitatory synaptic strength in primary visual cortex," Nature, Nature, vol. 518(7539), pages 399-403, February.
    14. Editors The, 2007. "From the Editors," Basic Income Studies, De Gruyter, vol. 2(1), pages 1-5, June.
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    1. Stefano Recanatesi & Gabriel Koch Ocker & Michael A Buice & Eric Shea-Brown, 2019. "Dimensionality in recurrent spiking networks: Global trends in activity and local origins in connectivity," PLOS Computational Biology, Public Library of Science, vol. 15(7), pages 1-29, July.
    2. Privault, Nicolas, 2021. "Recursive computation of the Hawkes cumulants," Statistics & Probability Letters, Elsevier, vol. 177(C).

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