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RBM39 degrader invigorates innate immunity to eradicate neuroblastoma despite cancer cell plasticity

Author

Listed:
  • Shivendra Singh

    (St. Jude Children’s Research Hospital)

  • Jie Fang

    (St. Jude Children’s Research Hospital)

  • Hongjian Jin

    (St. Jude Children’s Research Hospital)

  • Lee-Ann Van De Velde

    (St. Jude Children’s Research Hospital)

  • Andrew Cortes

    (St. Jude Children’s Research Hospital)

  • Jiani Chen

    (St. Jude Children’s Research Hospital)

  • Sivaraman Natarajan

    (St. Jude Children’s Research Hospital)

  • Evon Poon

    (The Institute of Cancer Research)

  • Qiong Wu

    (St. Jude Children’s Research Hospital)

  • Christopher L. Morton

    (St. Jude Children’s Research Hospital)

  • Mary A. Woolard

    (St. Jude Children’s Research Hospital)

  • Waise Quarni

    (St. Jude Children’s Research Hospital)

  • Jacob A. Steele

    (St. Jude Children’s Research Hospital)

  • Jon P. Connelly

    (St. Jude Children’s Research Hospital)

  • Liusheng He

    (St. Jude Children’s Research Hospital)

  • Rebecca Thorne

    (St. Jude Children’s Research Hospital)

  • Gregory Turner

    (St. Jude Children’s Research Hospital)

  • Thomas Confer

    (St. Jude Children’s Research Hospital)

  • Melissa Johnson

    (St. Jude Children’s Research Hospital)

  • William V. Caufield

    (St. Jude Children’s Research Hospital)

  • Burgess B. Freeman

    (St. Jude Children’s Research Hospital)

  • Timothy Lockey

    (St. Jude Children’s Research Hospital)

  • Andrew J. Murphy

    (St. Jude Children’s Research Hospital)

  • Peter J. Murray

    (Max Planck Institute of Biochemistry)

  • Takashi Owa

    (Eisai Inc.)

  • Shondra M. Pruett-Miller

    (St. Jude Children’s Research Hospital)

  • Ruoning Wang

    (The Ohio State University)

  • Louis Chesler

    (The Institute of Cancer Research)

  • Julie R. Park

    (St. Jude Children’s Research Hospital)

  • Andrew M. Davidoff

    (St. Jude Children’s Research Hospital
    The University of Tennessee Health Science Center
    The University of Tennessee Health Science Center)

  • John Easton

    (St. Jude Children’s Research Hospital)

  • Xiang Chen

    (St. Jude Children’s Research Hospital)

  • Paul G. Thomas

    (St. Jude Children’s Research Hospital)

  • Jun Yang

    (St. Jude Children’s Research Hospital
    The University of Tennessee Health Science Center
    University of Tennessee Health Science Center)

Abstract

The cellular plasticity of neuroblastoma is defined by a mixture of two major cell states, adrenergic and mesenchymal, which may contribute to therapy resistance. However, how neuroblastoma cells switch cellular states during therapy remains largely unknown, and how to eradicate neuroblastoma regardless of its cell state is a clinical challenge. To better understand the cellular plasticity of neuroblastoma in chemoresistance, we define the transcriptomic and epigenetic map of adrenergic and mesenchymal types of neuroblastomas using human and murine models treated with indisulam, a selective RBM39 degrader. We show that cancer cells not only undergo a bidirectional switch between adrenergic and mesenchymal states, but also acquire additional cellular states, reminiscent of the developmental pliancy of neural crest cells. These cell state alterations are coupled with epigenetic reprogramming and dependency switching of cell state–specific transcription factors, epigenetic modifiers, and targetable kinases. Through targeting RNA splicing, indisulam induces an inflammatory tumor microenvironment and enhances the anticancer activity of natural killer cells. The combination of indisulam with anti-GD2 immunotherapy results in a durable, complete response in high-risk transgenic neuroblastoma models, providing an innovative, rational therapeutic approach to eradicate tumor cells regardless of their potential to switch cell states.

Suggested Citation

  • Shivendra Singh & Jie Fang & Hongjian Jin & Lee-Ann Van De Velde & Andrew Cortes & Jiani Chen & Sivaraman Natarajan & Evon Poon & Qiong Wu & Christopher L. Morton & Mary A. Woolard & Waise Quarni & Ja, 2025. "RBM39 degrader invigorates innate immunity to eradicate neuroblastoma despite cancer cell plasticity," Nature Communications, Nature, vol. 16(1), pages 1-26, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-63979-x
    DOI: 10.1038/s41467-025-63979-x
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