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Self-supervised predictive learning accounts for cortical layer-specificity

Author

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  • Kevin Kermani Nejad

    (University of Oxford
    University of Bristol)

  • Paul Anastasiades

    (University of Bristol)

  • Loreen Hertäg

    (Technische Universität Berlin & Bernstein Center for Computational Neuroscience Berlin)

  • Rui Ponte Costa

    (University of Oxford
    University of Bristol)

Abstract

The neocortex constructs an internal representation of the world, but the underlying circuitry and computational principles remain unclear. Inspired by self-supervised learning algorithms, we propose a computational theory in which layer 2/3 (L2/3) integrates past sensory input, relayed via layer 4, with top-down context to predict incoming sensory stimuli. Learning is self-supervised by comparing L2/3 predictions with the latent representations of actual sensory input arriving at L5. We demonstrate that our model accurately predicts sensory information in context-dependent temporal tasks, and that its predictions are robust to noisy and occluded sensory input. Additionally, our model generates layer-specific sparsity, consistent with experimental observations. Next, using a sensorimotor task, we show that the model’s L2/3 and L5 prediction errors mirror mismatch responses observed in awake, behaving mice. Finally, through manipulations, we offer testable predictions to unveil the computational roles of various cortical features. In summary, our findings suggest that the multi-layered neocortex empowers the brain with self-supervised predictive learning.

Suggested Citation

  • Kevin Kermani Nejad & Paul Anastasiades & Loreen Hertäg & Rui Ponte Costa, 2025. "Self-supervised predictive learning accounts for cortical layer-specificity," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-61399-5
    DOI: 10.1038/s41467-025-61399-5
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    References listed on IDEAS

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    1. Yumiko Yoshimura & Jami L. M. Dantzker & Edward M. Callaway, 2005. "Excitatory cortical neurons form fine-scale functional networks," Nature, Nature, vol. 433(7028), pages 868-873, February.
    2. Jim Berg & Staci A. Sorensen & Jonathan T. Ting & Jeremy A. Miller & Thomas Chartrand & Anatoly Buchin & Trygve E. Bakken & Agata Budzillo & Nick Dee & Song-Lin Ding & Nathan W. Gouwens & Rebecca D. H, 2021. "Human neocortical expansion involves glutamatergic neuron diversification," Nature, Nature, vol. 598(7879), pages 151-158, October.
    3. Talia Konkle & George A. Alvarez, 2022. "A self-supervised domain-general learning framework for human ventral stream representation," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    4. Timothy P. Lillicrap & Daniel Cownden & Douglas B. Tweed & Colin J. Akerman, 2016. "Random synaptic feedback weights support error backpropagation for deep learning," Nature Communications, Nature, vol. 7(1), pages 1-10, December.
    5. Rebecca J. Rabinovich & Daniel D. Kato & Randy M. Bruno, 2022. "Learning enhances encoding of time and temporal surprise in mouse primary sensory cortex," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    6. Julie A. Harris & Stefan Mihalas & Karla E. Hirokawa & Jennifer D. Whitesell & Hannah Choi & Amy Bernard & Phillip Bohn & Shiella Caldejon & Linzy Casal & Andrew Cho & Aaron Feiner & David Feng & Nath, 2019. "Hierarchical organization of cortical and thalamic connectivity," Nature, Nature, vol. 575(7781), pages 195-202, November.
    7. N. Alex Cayco-Gajic & Claudia Clopath & R. Angus Silver, 2017. "Sparse synaptic connectivity is required for decorrelation and pattern separation in feedforward networks," Nature Communications, Nature, vol. 8(1), pages 1-11, December.
    8. Leopoldo Petreanu & Tianyi Mao & Scott M. Sternson & Karel Svoboda, 2009. "The subcellular organization of neocortical excitatory connections," Nature, Nature, vol. 457(7233), pages 1142-1145, February.
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