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Oral ENPP1 inhibitor designed using generative AI as next generation STING modulator for solid tumors

Author

Listed:
  • Congying Pu

    (Pudong New Area)

  • Hui Cui

    (Pudong New Area)

  • Huaxing Yu

    (Pudong New Area)

  • Xin Cheng

    (Pudong New Area)

  • Man Zhang

    (Pudong New Area)

  • Luoheng Qin

    (Pudong New Area)

  • Zhilin Ning

    (Pudong New Area)

  • Wen Zhang

    (Pudong New Area)

  • Shan Chen

    (Pudong New Area)

  • Yuhang Qian

    (Pudong New Area)

  • Feng Wang

    (Pudong New Area)

  • Ling Wang

    (Pudong New Area)

  • Xiaoxia Lin

    (Pudong New Area)

  • David Gennert

    (Suite 126)

  • Frank W. Pun

    (Hong Kong Science Park)

  • Feng Ren

    (Pudong New Area
    Suite 126
    6F International Renewable Agency (IRENA) Building)

  • Alex Zhavoronkov

    (Suite 126
    Hong Kong Science Park
    6F International Renewable Agency (IRENA) Building)

Abstract

Despite the STING-type-I interferon pathway playing a key role in effective anti-tumor immunity, the therapeutic benefit of direct STING agonists appears limited. In this study, we use several artificial intelligence techniques and patient-based multi-omics data to show that Ectonucleotide Pyrophosphatase/Phosphodiesterase 1 (ENPP1), which hydrolyzes STING-activating cyclic GMP-AMP (cGAMP), is a safer and more effective STING-modulating target than direct STING agonism in multiple solid tumors. We then leverage our generative chemistry artificial intelligence-based drug design platform to facilitate the design of ISM5939, an orally bioavailable ENPP1-selective inhibitor capable of stabilizing extracellular cGAMP and activating bystander antigen-presenting cells without inducing either toxic inflammatory cytokine release or tumor-infiltrating T-cell death. In murine syngeneic models across cancer types, ISM5939 synergizes with targeting the PD-1/PD-L1 axis and chemotherapy in suppressing tumor growth with good tolerance. Our findings provide evidence supporting ENPP1 as an innate immune checkpoint across solid tumors and reports an AI design-aided ENPP1 inhibitor, ISM5939, as a cutting-edge STING modulator for cancer therapy, paving a path for immunotherapy advancements.

Suggested Citation

  • Congying Pu & Hui Cui & Huaxing Yu & Xin Cheng & Man Zhang & Luoheng Qin & Zhilin Ning & Wen Zhang & Shan Chen & Yuhang Qian & Feng Wang & Ling Wang & Xiaoxia Lin & David Gennert & Frank W. Pun & Feng, 2025. "Oral ENPP1 inhibitor designed using generative AI as next generation STING modulator for solid tumors," Nature Communications, Nature, vol. 16(1), pages 1-23, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-59874-0
    DOI: 10.1038/s41467-025-59874-0
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