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Impact of unequal testing on vaccine effectiveness estimates across two study designs: a simulation study

Author

Listed:
  • Korryn Bodner

    (Unity Health Toronto)

  • Linwei Wang

    (Unity Health Toronto)

  • Rafal Kustra

    (University of Toronto
    University of Toronto)

  • Jeffrey C. Kwong

    (ICES
    University of Toronto
    Public Health Ontario
    University of Toronto)

  • Beate Sander

    (ICES
    Public Health Ontario
    University of Toronto
    University Health Network)

  • Hind Sbihi

    (British Columbia Centre for Disease Control
    University of British Columbia)

  • Michael A. Irvine

    (British Columbia Centre for Disease Control
    Simon Fraser University)

  • Sharmistha Mishra

    (Unity Health Toronto
    ICES
    University of Toronto
    University of Toronto)

Abstract

Observational studies are essential for measuring vaccine effectiveness. Recent research has raised concerns about how a relationship between testing and vaccination may affect estimates of vaccine effectiveness against symptomatic infection (symptomatic VE). Using an agent-based network model and SARS-CoV-2 as an example, we investigated how differences in the likelihood of testing by vaccination could influence estimates of symptomatic VE across two common study designs: retrospective cohort and test-negative designs. First, we measured the influence of unequal testing on symptomatic VE estimates across study designs and sampling periods. Next, we investigated whether the magnitude of bias in VE estimates from unequal testing was shaped by immune escape (vaccine efficacy against susceptibility and against infectiousness) and underlying epidemic potential (probability of transmission). We found that unequal testing led to larger bias in the cohort design than the test-negative design and that bias was largest with lower efficacy against susceptibility. We also found the magnitude of bias was moderated by the study’s selected sampling period, efficacy against infectiousness, and probability of transmission, with these moderating effects more pronounced in the test-negative design. Our study illustrates that VE estimates across study designs require careful interpretation, especially in the presence of epidemic and immunological heterogeneity.

Suggested Citation

  • Korryn Bodner & Linwei Wang & Rafal Kustra & Jeffrey C. Kwong & Beate Sander & Hind Sbihi & Michael A. Irvine & Sharmistha Mishra, 2025. "Impact of unequal testing on vaccine effectiveness estimates across two study designs: a simulation study," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-59768-1
    DOI: 10.1038/s41467-025-59768-1
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    References listed on IDEAS

    as
    1. Kendrick Qijun Li & Xu Shi & Wang Miao & Eric Tchetgen Tchetgen, 2024. "Double Negative Control Inference in Test-Negative Design Studies of Vaccine Effectiveness," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 119(547), pages 1859-1870, July.
    2. Thiago Cerqueira-Silva & Vinicius Araujo Oliveira & Enny S. Paixão & Juracy Bertoldo Júnior & Gerson O. Penna & Guilherme L. Werneck & Neil Pearce & Maurício L. Barreto & Viviane S. Boaventura & Manoe, 2022. "Duration of protection of CoronaVac plus heterologous BNT162b2 booster in the Omicron period in Brazil," Nature Communications, Nature, vol. 13(1), pages 1-6, December.
    3. Neda Jalali & Hilde K. Brustad & Arnoldo Frigessi & Emily A. MacDonald & Hinta Meijerink & Siri L. Feruglio & Karin M. Nygård & Gunnar Rø & Elisabeth H. Madslien & Birgitte Freiesleben de Blasio, 2022. "Increased household transmission and immune escape of the SARS-CoV-2 Omicron compared to Delta variants," Nature Communications, Nature, vol. 13(1), pages 1-5, December.
    4. Frederik Plesner Lyngse & Laust Hvas Mortensen & Matthew J. Denwood & Lasse Engbo Christiansen & Camilla Holten Møller & Robert Leo Skov & Katja Spiess & Anders Fomsgaard & Ria Lassaunière & Morten Ra, 2022. "Household transmission of the SARS-CoV-2 Omicron variant in Denmark," Nature Communications, Nature, vol. 13(1), pages 1-7, December.
    5. Hiam Chemaitelly & Houssein H. Ayoub & Sawsan AlMukdad & Peter Coyle & Patrick Tang & Hadi M. Yassine & Hebah A. Al-Khatib & Maria K. Smatti & Mohammad R. Hasan & Zaina Al-Kanaani & Einas Al-Kuwari & , 2022. "Duration of mRNA vaccine protection against SARS-CoV-2 Omicron BA.1 and BA.2 subvariants in Qatar," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
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