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Molecular-level insights into the supramolecular gelation mechanism of urea derivative

Author

Listed:
  • Shinya Kimura

    (Meiji Pharmaceutical University)

  • Kurea Adachi

    (Meiji Pharmaceutical University)

  • Yoshiki Ishii

    (Nagoya University)

  • Tomoki Komiyama

    (Meiji Pharmaceutical University
    Shizuoka University)

  • Takuho Saito

    (Chiba University)

  • Naofumi Nakayama

    (CONFLEX Corporation)

  • Masashi Yokoya

    (Meiji Pharmaceutical University)

  • Hikaru Takaya

    (Teikyo University of Science
    National Institute of Natural Science)

  • Shiki Yagai

    (Chiba University
    Chiba University)

  • Shinnosuke Kawai

    (Shizuoka University)

  • Takayuki Uchihashi

    (Nagoya University
    National Institutes of Natural Sciences)

  • Masamichi Yamanaka

    (Meiji Pharmaceutical University)

Abstract

Despite being a promising soft material embodied by molecular self-assembly, the formation mechanism of supramolecular gels remains challenging to fully understand. Here we provide molecular to nanoscopic insights into the formation mechanism of gel-forming fibers from a urea derivative. High-speed atomic force microscopy of the urea derivative revealed the presence of a lag phase prior to the formation of supramolecular fibers, suggesting a nucleation process. The fiber growth kinetics differ at both termini of the fiber, indicating a directional hydrogen-bonding motif by the urea units, which is supported by single-crystal X-ray crystallography of a reference compound. Moreover, we observed an intermittent growth pattern of the fibers with repeated elongation and pause phases. This unique behavior can be simulated by a theoretical block-stacking model. A statistical analysis of the concentration-dependent lag time on macroscopic observation of the gelation suggests the presence of a tetrameric or octameric nucleus of the urea molecules.

Suggested Citation

  • Shinya Kimura & Kurea Adachi & Yoshiki Ishii & Tomoki Komiyama & Takuho Saito & Naofumi Nakayama & Masashi Yokoya & Hikaru Takaya & Shiki Yagai & Shinnosuke Kawai & Takayuki Uchihashi & Masamichi Yama, 2025. "Molecular-level insights into the supramolecular gelation mechanism of urea derivative," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-59032-6
    DOI: 10.1038/s41467-025-59032-6
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