IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v16y2025i1d10.1038_s41467-025-58030-y.html
   My bibliography  Save this article

The coming wave of confluent biosynthetic, bioinformational and bioengineering technologies

Author

Listed:
  • Isak S. Pretorius

    (ARC Centre of Excellence in Synthetic Biology, Macquarie University)

  • Thomas A. Dixon

    (ARC Centre of Excellence in Synthetic Biology, Macquarie University)

  • Michael Boers

    (Macquarie University)

  • Ian T. Paulsen

    (ARC Centre of Excellence in Synthetic Biology, Macquarie University)

  • Daniel L. Johnson

    (ARC Centre of Excellence in Synthetic Biology, Macquarie University)

Abstract

Information and energy flows form the basis of all economic activity, with advanced technologies underpinning both. Profound uncertainties caused by geostrategic forces have accelerated a trillion-dollar race for technological superiority. The result is an onrush of “technovation” at the nexus of synthetic biotechnologies, information technologies, nanotechnologies and engineering technologies. This article explores recent breakthroughs in integrating chip technologies and synthetic bioinformational engineering. It investigates prospects of biomolecules as carriers of stored digital data, synthetic cells-on-a-chip, and hybrid semiconductors and next-generation artificial intelligence processors. Consilience—unity of knowledge—redefines possibilities emerging from the living interface of biologically-inspired engineering and engineering-enabled biology.

Suggested Citation

  • Isak S. Pretorius & Thomas A. Dixon & Michael Boers & Ian T. Paulsen & Daniel L. Johnson, 2025. "The coming wave of confluent biosynthetic, bioinformational and bioengineering technologies," Nature Communications, Nature, vol. 16(1), pages 1-8, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-58030-y
    DOI: 10.1038/s41467-025-58030-y
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-025-58030-y
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-025-58030-y?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Nick Goldman & Paul Bertone & Siyuan Chen & Christophe Dessimoz & Emily M. LeProust & Botond Sipos & Ewan Birney, 2013. "Towards practical, high-capacity, low-maintenance information storage in synthesized DNA," Nature, Nature, vol. 494(7435), pages 77-80, February.
    2. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    3. Sven Dorkenwald & Arie Matsliah & Amy R. Sterling & Philipp Schlegel & Szi-chieh Yu & Claire E. McKellar & Albert Lin & Marta Costa & Katharina Eichler & Yijie Yin & Will Silversmith & Casey Schneider, 2024. "Neuronal wiring diagram of an adult brain," Nature, Nature, vol. 634(8032), pages 124-138, October.
    4. Briardo Llorente & Thomas C. Williams & Hugh D. Goold & Isak S. Pretorius & Ian T. Paulsen, 2022. "Harnessing bioengineered microbes as a versatile platform for space nutrition," Nature Communications, Nature, vol. 13(1), pages 1-7, December.
    5. Xin Xu & Felix Meier & Benjamin A. Blount & Isak S. Pretorius & Tom Ellis & Ian T. Paulsen & Thomas C. Williams, 2023. "Trimming the genomic fat: minimising and re-functionalising genomes using synthetic biology," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    6. Thomas A. Dixon & Thomas C. Williams & Isak S. Pretorius, 2021. "Sensing the future of bio-informational engineering," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    7. Lifu Song & Feng Geng & Zi-Yi Gong & Xin Chen & Jijun Tang & Chunye Gong & Libang Zhou & Rui Xia & Ming-Zhe Han & Jing-Yi Xu & Bing-Zhi Li & Ying-Jin Yuan, 2022. "Robust data storage in DNA by de Bruijn graph-based de novo strand assembly," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    8. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    9. Neha Sapkal & Nino Mancini & Divya Sthanu Kumar & Nico Spiller & Kazuma Murakami & Gianna Vitelli & Benjamin Bargeron & Kate Maier & Katharina Eichler & Gregory S. X. E. Jefferis & Philip K. Shiu & Ga, 2024. "Neural circuit mechanisms underlying context-specific halting in Drosophila," Nature, Nature, vol. 634(8032), pages 191-200, October.
    10. Philip K. Shiu & Gabriella R. Sterne & Nico Spiller & Romain Franconville & Andrea Sandoval & Joie Zhou & Neha Simha & Chan Hyuk Kang & Seongbong Yu & Jinseop S. Kim & Sven Dorkenwald & Arie Matsliah , 2024. "A Drosophila computational brain model reveals sensorimotor processing," Nature, Nature, vol. 634(8032), pages 210-219, October.
    11. Tae Seok Moon & Chunbo Lou & Alvin Tamsir & Brynne C. Stanton & Christopher A. Voigt, 2012. "Genetic programs constructed from layered logic gates in single cells," Nature, Nature, vol. 491(7423), pages 249-253, November.
    12. Susana Vázquez Torres & Philip J. Y. Leung & Preetham Venkatesh & Isaac D. Lutz & Fabian Hink & Huu-Hien Huynh & Jessica Becker & Andy Hsien-Wei Yeh & David Juergens & Nathaniel R. Bennett & Andrew N., 2024. "De novo design of high-affinity binders of bioactive helical peptides," Nature, Nature, vol. 626(7998), pages 435-442, February.
    13. Philipp Schlegel & Yijie Yin & Alexander S. Bates & Sven Dorkenwald & Katharina Eichler & Paul Brooks & Daniel S. Han & Marina Gkantia & Marcia Santos & Eva J. Munnelly & Griffin Badalamente & Laia Se, 2024. "Whole-brain annotation and multi-connectome cell typing of Drosophila," Nature, Nature, vol. 634(8032), pages 139-152, October.
    14. Alvin Tamsir & Jeffrey J. Tabor & Christopher A. Voigt, 2011. "Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’," Nature, Nature, vol. 469(7329), pages 212-215, January.
    15. Thomas A. Dixon & Paul S. Freemont & Richard A. Johnson & Isak S. Pretorius, 2022. "A global forum on synthetic biology: the need for international engagement," Nature Communications, Nature, vol. 13(1), pages 1-5, December.
    16. Joseph L. Watson & David Juergens & Nathaniel R. Bennett & Brian L. Trippe & Jason Yim & Helen E. Eisenach & Woody Ahern & Andrew J. Borst & Robert J. Ragotte & Lukas F. Milles & Basile I. M. Wicky & , 2023. "De novo design of protein structure and function with RFdiffusion," Nature, Nature, vol. 620(7976), pages 1089-1100, August.
    17. Cheng Zhang & Ranfeng Wu & Fajia Sun & Yisheng Lin & Yuan Liang & Jiongjiong Teng & Na Liu & Qi Ouyang & Long Qian & Hao Yan, 2024. "Parallel molecular data storage by printing epigenetic bits on DNA," Nature, Nature, vol. 634(8035), pages 824-832, October.
    18. Jonathan Symons & Thomas A. Dixon & Jacqueline Dalziell & Natalie Curach & Ian T. Paulsen & Anthony Wiskich & Isak S. Pretorius, 2024. "Engineering biology and climate change mitigation: Policy considerations," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Yixuan Zhong & Huihui Tao & Yu Zhang & Binbin He & Haizhan Jiao & Dandan Wang & Maikun Teng & Hongli Hu & Qiong Guo & Yuyong Tao, 2025. "Structure-guided engineering of snake toxins for selective modulation of adrenergic and muscarinic receptors," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
    2. Aika Iwama & Ryoji Kise & Hiroaki Akasaka & Fumiya K. Sano & Hidetaka S. Oshima & Asuka Inoue & Wataru Shihoya & Osamu Nureki, 2024. "Structure and dynamics of the pyroglutamylated RF-amide peptide QRFP receptor GPR103," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    3. Laura Shub & Wenjin Liu & Georgios Skiniotis & Michael J. Keiser & Michael J. Robertson, 2025. "MIC: A deep learning tool for assigning ions and waters in cryo-EM and crystal structures," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
    4. Lucien F. Krapp & Fernando A. Meireles & Luciano A. Abriata & Jean Devillard & Sarah Vacle & Maria J. Marcaida & Matteo Dal Peraro, 2024. "Context-aware geometric deep learning for protein sequence design," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    5. Arne Matthys & Jan Felix & Joao Paulo Portela Catani & Kenny Roose & Wim Nerinckx & Benthe Buyten & Daria Fijalkowska & Nico Callewaert & Savvas N. Savvides & Xavier Saelens, 2025. "Single-domain antibodies directed against hemagglutinin and neuraminidase protect against influenza B viruses," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
    6. Daniel R. Fox & Kazem Asadollahi & Imogen Samuels & Bradley A. Spicer & Ashleigh Kropp & Christopher J. Lupton & Kevin Lim & Chunxiao Wang & Hari Venugopal & Marija Dramicanin & Gavin J. Knott & Rhys , 2025. "Inhibiting heme piracy by pathogenic Escherichia coli using de novo-designed proteins," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
    7. Yash Chainani & Jacob Diaz & Margaret Guilarte-Silva & Vincent Blay & Quan Zhang & William Sprague & Keith E. J. Tyo & Linda J. Broadbelt & Aindrila Mukhopadhyay & Jay D. Keasling & Hector Garcia Mart, 2025. "Merging the computational design of chimeric type I polyketide synthases with enzymatic pathways for chemical biosynthesis," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
    8. Wei Lu & Jixian Zhang & Weifeng Huang & Ziqiao Zhang & Xiangyu Jia & Zhenyu Wang & Leilei Shi & Chengtao Li & Peter G. Wolynes & Shuangjia Zheng, 2024. "DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    9. Meghana Kshirsagar & Artur Meller & Ian R. Humphreys & Samuel Sledzieski & Yixi Xu & Rahul Dodhia & Eric Horvitz & Bonnie Berger & Gregory R. Bowman & Juan Lavista Ferres & David Baker & Minkyung Baek, 2025. "Rapid and accurate prediction of protein homo-oligomer symmetry using Seq2Symm," Nature Communications, Nature, vol. 16(1), pages 1-11, December.
    10. Chase R. Freschlin & Sarah A. Fahlberg & Pete Heinzelman & Philip A. Romero, 2024. "Neural network extrapolation to distant regions of the protein fitness landscape," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    11. Enrico Orsi & Lennart Schada von Borzyskowski & Stephan Noack & Pablo I. Nikel & Steffen N. Lindner, 2024. "Automated in vivo enzyme engineering accelerates biocatalyst optimization," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    12. Simon d’Oelsnitz & Daniel J. Diaz & Wantae Kim & Daniel J. Acosta & Tyler L. Dangerfield & Mason W. Schechter & Matthew B. Minus & James R. Howard & Hannah Do & James M. Loy & Hal S. Alper & Y. Jessie, 2024. "Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    13. Pantelis Livanos & Choy Kriechbaum & Sophia Remers & Arvid Herrmann & Sabine Müller, 2025. "Kinesin-12 POK2 polarization is a prerequisite for a fully functional division site and aids cell plate positioning," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
    14. Surabhi Kokane & Ashutosh Gulati & Pascal F. Meier & Rei Matsuoka & Tanadet Pipatpolkai & Giuseppe Albano & Tin Manh Ho & Lucie Delemotte & Daniel Fuster & David Drew, 2025. "PIP2-mediated oligomerization of the endosomal sodium/proton exchanger NHE9," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
    15. Justin Riper & Arleth O. Martinez-Claros & Lie Wang & Hannah E. Schneiderman & Sweta Maheshwari & Monica C. Pillon, 2025. "CryoEM structure of the SLFN14 endoribonuclease reveals insight into RNA binding and cleavage," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
    16. Pierre Azoulay & Joshua Krieger & Abhishek Nagaraj, 2024. "Old Moats for New Models: Openness, Control, and Competition in Generative Artificial Intelligence," NBER Chapters, in: Entrepreneurship and Innovation Policy and the Economy, volume 4, pages 7-46, National Bureau of Economic Research, Inc.
    17. Xin Yong & Guowen Jia & Qin Yang & Chunzhuang Zhou & Sitao Zhang & Huaqing Deng & Daniel D. Billadeau & Zhaoming Su & Da Jia, 2025. "Cryo-EM structure of the BLOC-3 complex provides insights into the pathogenesis of Hermansky-Pudlak syndrome," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
    18. Jun-Yu Si & Yuan-Mei Chen & Ye-Hui Sun & Meng-Xue Gu & Mei-Ling Huang & Lu-Lu Shi & Xiao Yu & Xiao Yang & Qing Xiong & Cheng-Bao Ma & Peng Liu & Zheng-Li Shi & Huan Yan, 2024. "Sarbecovirus RBD indels and specific residues dictating multi-species ACE2 adaptiveness," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    19. Deyun Qiu & Jinxin V. Pei & James E. O. Rosling & Vandana Thathy & Dongdi Li & Yi Xue & John D. Tanner & Jocelyn Sietsma Penington & Yi Tong Vincent Aw & Jessica Yi Han Aw & Guoyue Xu & Abhai K. Tripa, 2022. "A G358S mutation in the Plasmodium falciparum Na+ pump PfATP4 confers clinically-relevant resistance to cipargamin," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
    20. Shuo-Shuo Liu & Tian-Xia Jiang & Fan Bu & Ji-Lan Zhao & Guang-Fei Wang & Guo-Heng Yang & Jie-Yan Kong & Yun-Fan Qie & Pei Wen & Li-Bin Fan & Ning-Ning Li & Ning Gao & Xiao-Bo Qiu, 2024. "Molecular mechanisms underlying the BIRC6-mediated regulation of apoptosis and autophagy," Nature Communications, Nature, vol. 15(1), pages 1-16, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-58030-y. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.