The coming wave of confluent biosynthetic, bioinformational and bioengineering technologies
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-025-58030-y
Download full text from publisher
References listed on IDEAS
- Joseph L. Watson & David Juergens & Nathaniel R. Bennett & Brian L. Trippe & Jason Yim & Helen E. Eisenach & Woody Ahern & Andrew J. Borst & Robert J. Ragotte & Lukas F. Milles & Basile I. M. Wicky & , 2023. "De novo design of protein structure and function with RFdiffusion," Nature, Nature, vol. 620(7976), pages 1089-1100, August.
- Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
- Briardo Llorente & Thomas C. Williams & Hugh D. Goold & Isak S. Pretorius & Ian T. Paulsen, 2022. "Harnessing bioengineered microbes as a versatile platform for space nutrition," Nature Communications, Nature, vol. 13(1), pages 1-7, December.
- Alvin Tamsir & Jeffrey J. Tabor & Christopher A. Voigt, 2011. "Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’," Nature, Nature, vol. 469(7329), pages 212-215, January.
- Neha Sapkal & Nino Mancini & Divya Sthanu Kumar & Nico Spiller & Kazuma Murakami & Gianna Vitelli & Benjamin Bargeron & Kate Maier & Katharina Eichler & Gregory S. X. E. Jefferis & Philip K. Shiu & Ga, 2024. "Neural circuit mechanisms underlying context-specific halting in Drosophila," Nature, Nature, vol. 634(8032), pages 191-200, October.
- Nick Goldman & Paul Bertone & Siyuan Chen & Christophe Dessimoz & Emily M. LeProust & Botond Sipos & Ewan Birney, 2013. "Towards practical, high-capacity, low-maintenance information storage in synthesized DNA," Nature, Nature, vol. 494(7435), pages 77-80, February.
- Philip K. Shiu & Gabriella R. Sterne & Nico Spiller & Romain Franconville & Andrea Sandoval & Joie Zhou & Neha Simha & Chan Hyuk Kang & Seongbong Yu & Jinseop S. Kim & Sven Dorkenwald & Arie Matsliah , 2024. "A Drosophila computational brain model reveals sensorimotor processing," Nature, Nature, vol. 634(8032), pages 210-219, October.
- Lifu Song & Feng Geng & Zi-Yi Gong & Xin Chen & Jijun Tang & Chunye Gong & Libang Zhou & Rui Xia & Ming-Zhe Han & Jing-Yi Xu & Bing-Zhi Li & Ying-Jin Yuan, 2022. "Robust data storage in DNA by de Bruijn graph-based de novo strand assembly," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
- Sven Dorkenwald & Arie Matsliah & Amy R. Sterling & Philipp Schlegel & Szi-chieh Yu & Claire E. McKellar & Albert Lin & Marta Costa & Katharina Eichler & Yijie Yin & Will Silversmith & Casey Schneider, 2024. "Neuronal wiring diagram of an adult brain," Nature, Nature, vol. 634(8032), pages 124-138, October.
- Tae Seok Moon & Chunbo Lou & Alvin Tamsir & Brynne C. Stanton & Christopher A. Voigt, 2012. "Genetic programs constructed from layered logic gates in single cells," Nature, Nature, vol. 491(7423), pages 249-253, November.
- Susana Vázquez Torres & Philip J. Y. Leung & Preetham Venkatesh & Isaac D. Lutz & Fabian Hink & Huu-Hien Huynh & Jessica Becker & Andy Hsien-Wei Yeh & David Juergens & Nathaniel R. Bennett & Andrew N., 2024. "De novo design of high-affinity binders of bioactive helical peptides," Nature, Nature, vol. 626(7998), pages 435-442, February.
- Cheng Zhang & Ranfeng Wu & Fajia Sun & Yisheng Lin & Yuan Liang & Jiongjiong Teng & Na Liu & Qi Ouyang & Long Qian & Hao Yan, 2024. "Parallel molecular data storage by printing epigenetic bits on DNA," Nature, Nature, vol. 634(8035), pages 824-832, October.
- John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
- Jonathan Symons & Thomas A. Dixon & Jacqueline Dalziell & Natalie Curach & Ian T. Paulsen & Anthony Wiskich & Isak S. Pretorius, 2024. "Engineering biology and climate change mitigation: Policy considerations," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
- Xin Xu & Felix Meier & Benjamin A. Blount & Isak S. Pretorius & Tom Ellis & Ian T. Paulsen & Thomas C. Williams, 2023. "Trimming the genomic fat: minimising and re-functionalising genomes using synthetic biology," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
- Philipp Schlegel & Yijie Yin & Alexander S. Bates & Sven Dorkenwald & Katharina Eichler & Paul Brooks & Daniel S. Han & Marina Gkantia & Marcia Santos & Eva J. Munnelly & Griffin Badalamente & Laia Se, 2024. "Whole-brain annotation and multi-connectome cell typing of Drosophila," Nature, Nature, vol. 634(8032), pages 139-152, October.
- Thomas A. Dixon & Thomas C. Williams & Isak S. Pretorius, 2021. "Sensing the future of bio-informational engineering," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
- Thomas A. Dixon & Paul S. Freemont & Richard A. Johnson & Isak S. Pretorius, 2022. "A global forum on synthetic biology: the need for international engagement," Nature Communications, Nature, vol. 13(1), pages 1-5, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Arne Matthys & Jan Felix & Joao Paulo Portela Catani & Kenny Roose & Wim Nerinckx & Benthe Buyten & Daria Fijalkowska & Nico Callewaert & Savvas N. Savvides & Xavier Saelens, 2025. "Single-domain antibodies directed against hemagglutinin and neuraminidase protect against influenza B viruses," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
- Yixuan Zhong & Huihui Tao & Yu Zhang & Binbin He & Haizhan Jiao & Dandan Wang & Maikun Teng & Hongli Hu & Qiong Guo & Yuyong Tao, 2025. "Structure-guided engineering of snake toxins for selective modulation of adrenergic and muscarinic receptors," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
- Daniel R. Fox & Kazem Asadollahi & Imogen Samuels & Bradley A. Spicer & Ashleigh Kropp & Christopher J. Lupton & Kevin Lim & Chunxiao Wang & Hari Venugopal & Marija Dramicanin & Gavin J. Knott & Rhys , 2025. "Inhibiting heme piracy by pathogenic Escherichia coli using de novo-designed proteins," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
- Yash Chainani & Jacob Diaz & Margaret Guilarte-Silva & Vincent Blay & Quan Zhang & William Sprague & Keith E. J. Tyo & Linda J. Broadbelt & Aindrila Mukhopadhyay & Jay D. Keasling & Hector Garcia Mart, 2025. "Merging the computational design of chimeric type I polyketide synthases with enzymatic pathways for chemical biosynthesis," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
- Aika Iwama & Ryoji Kise & Hiroaki Akasaka & Fumiya K. Sano & Hidetaka S. Oshima & Asuka Inoue & Wataru Shihoya & Osamu Nureki, 2024. "Structure and dynamics of the pyroglutamylated RF-amide peptide QRFP receptor GPR103," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Wei Lu & Jixian Zhang & Weifeng Huang & Ziqiao Zhang & Xiangyu Jia & Zhenyu Wang & Leilei Shi & Chengtao Li & Peter G. Wolynes & Shuangjia Zheng, 2024. "DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Meghana Kshirsagar & Artur Meller & Ian R. Humphreys & Samuel Sledzieski & Yixi Xu & Rahul Dodhia & Eric Horvitz & Bonnie Berger & Gregory R. Bowman & Juan Lavista Ferres & David Baker & Minkyung Baek, 2025. "Rapid and accurate prediction of protein homo-oligomer symmetry using Seq2Symm," Nature Communications, Nature, vol. 16(1), pages 1-11, December.
- Laura Shub & Wenjin Liu & Georgios Skiniotis & Michael J. Keiser & Michael J. Robertson, 2025. "MIC: A deep learning tool for assigning ions and waters in cryo-EM and crystal structures," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
- Chase R. Freschlin & Sarah A. Fahlberg & Pete Heinzelman & Philip A. Romero, 2024. "Neural network extrapolation to distant regions of the protein fitness landscape," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Enrico Orsi & Lennart Schada von Borzyskowski & Stephan Noack & Pablo I. Nikel & Steffen N. Lindner, 2024. "Automated in vivo enzyme engineering accelerates biocatalyst optimization," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Lucien F. Krapp & Fernando A. Meireles & Luciano A. Abriata & Jean Devillard & Sarah Vacle & Maria J. Marcaida & Matteo Dal Peraro, 2024. "Context-aware geometric deep learning for protein sequence design," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
- Simon d’Oelsnitz & Daniel J. Diaz & Wantae Kim & Daniel J. Acosta & Tyler L. Dangerfield & Mason W. Schechter & Matthew B. Minus & James R. Howard & Hannah Do & James M. Loy & Hal S. Alper & Y. Jessie, 2024. "Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Ye Yuan & Lei Chen & Kexu Song & Miaomiao Cheng & Ling Fang & Lingfei Kong & Lanlan Yu & Ruonan Wang & Zhendong Fu & Minmin Sun & Qian Wang & Chengjun Cui & Haojue Wang & Jiuyang He & Xiaonan Wang & Y, 2024. "Stable peptide-assembled nanozyme mimicking dual antifungal actions," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Ivica Odorčić & Mohamed Belal Hamed & Sam Lismont & Lucía Chávez-Gutiérrez & Rouslan G. Efremov, 2024. "Apo and Aβ46-bound γ-secretase structures provide insights into amyloid-β processing by the APH-1B isoform," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Pantelis Livanos & Choy Kriechbaum & Sophia Remers & Arvid Herrmann & Sabine Müller, 2025. "Kinesin-12 POK2 polarization is a prerequisite for a fully functional division site and aids cell plate positioning," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
- Surabhi Kokane & Ashutosh Gulati & Pascal F. Meier & Rei Matsuoka & Tanadet Pipatpolkai & Giuseppe Albano & Tin Manh Ho & Lucie Delemotte & Daniel Fuster & David Drew, 2025. "PIP2-mediated oligomerization of the endosomal sodium/proton exchanger NHE9," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
- Justin Riper & Arleth O. Martinez-Claros & Lie Wang & Hannah E. Schneiderman & Sweta Maheshwari & Monica C. Pillon, 2025. "CryoEM structure of the SLFN14 endoribonuclease reveals insight into RNA binding and cleavage," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
- Stella Vitt & Simone Prinz & Martin Eisinger & Ulrich Ermler & Wolfgang Buckel, 2022. "Purification and structural characterization of the Na+-translocating ferredoxin: NAD+ reductase (Rnf) complex of Clostridium tetanomorphum," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- Pierre Azoulay & Joshua Krieger & Abhishek Nagaraj, 2024. "Old Moats for New Models: Openness, Control, and Competition in Generative Artificial Intelligence," NBER Chapters, in: Entrepreneurship and Innovation Policy and the Economy, volume 4, pages 7-46, National Bureau of Economic Research, Inc.
- Riya Shah & Thomas C. Panagiotou & Gregory B. Cole & Trevor F. Moraes & Brigitte D. Lavoie & Christopher A. McCulloch & Andrew Wilde, 2024. "The DIAPH3 linker specifies a β-actin network that maintains RhoA and Myosin-II at the cytokinetic furrow," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-58030-y. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.