Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-022-31388-z
Download full text from publisher
References listed on IDEAS
- Fredrik Edfors & Andreas Hober & Klas Linderbäck & Gianluca Maddalo & Alireza Azimi & Åsa Sivertsson & Hanna Tegel & Sophia Hober & Cristina Al-Khalili Szigyarto & Linn Fagerberg & Kalle Feilitzen & P, 2018. "Enhanced validation of antibodies for research applications," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
- Blue B. Lake & Song Chen & Masato Hoshi & Nongluk Plongthongkum & Diane Salamon & Amanda Knoten & Anitha Vijayan & Ramakrishna Venkatesh & Eric H. Kim & Derek Gao & Joseph Gaut & Kun Zhang & Sanjay Ja, 2019. "A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
- Vân Anh Huynh-Thu & Alexandre Irrthum & Louis Wehenkel & Pierre Geurts, 2010. "Inferring Regulatory Networks from Expression Data Using Tree-Based Methods," PLOS ONE, Public Library of Science, vol. 5(9), pages 1-10, September.
- Elisabetta Dejana & Karen K. Hirschi & Michael Simons, 2017. "The molecular basis of endothelial cell plasticity," Nature Communications, Nature, vol. 8(1), pages 1-11, April.
- Roberta Bulla & Claudio Tripodo & Damiano Rami & Guang Sheng Ling & Chiara Agostinis & Carla Guarnotta & Sonia Zorzet & Paolo Durigutto & Marina Botto & Francesco Tedesco, 2016. "C1q acts in the tumour microenvironment as a cancer-promoting factor independently of complement activation," Nature Communications, Nature, vol. 7(1), pages 1-11, April.
- Aleksandra Deczkowska & Orit Matcovitch-Natan & Afroditi Tsitsou-Kampeli & Sefi Ben-Hamo & Raz Dvir-Szternfeld & Amit Spinrad & Oded Singer & Eyal David & Deborah R. Winter & Lucas K. Smith & Alexande, 2017. "Mef2C restrains microglial inflammatory response and is lost in brain ageing in an IFN-I-dependent manner," Nature Communications, Nature, vol. 8(1), pages 1-13, December.
- Suoqin Jin & Christian F. Guerrero-Juarez & Lihua Zhang & Ivan Chang & Raul Ramos & Chen-Hsiang Kuan & Peggy Myung & Maksim V. Plikus & Qing Nie, 2021. "Inference and analysis of cell-cell communication using CellChat," Nature Communications, Nature, vol. 12(1), pages 1-20, December.
- Long Jin & Qianzi Tang & Silu Hu & Zhongxu Chen & Xuming Zhou & Bo Zeng & Yuhao Wang & Mengnan He & Yan Li & Lixuan Gui & Linyuan Shen & Keren Long & Jideng Ma & Xun Wang & Zhengli Chen & Yanzhi Jiang, 2021. "A pig BodyMap transcriptome reveals diverse tissue physiologies and evolutionary dynamics of transcription," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
- Xiaoping Han & Ziming Zhou & Lijiang Fei & Huiyu Sun & Renying Wang & Yao Chen & Haide Chen & Jingjing Wang & Huanna Tang & Wenhao Ge & Yincong Zhou & Fang Ye & Mengmeng Jiang & Junqing Wu & Yanyu Xia, 2020. "Construction of a human cell landscape at single-cell level," Nature, Nature, vol. 581(7808), pages 303-309, May.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Yuyao Song & Zhichao Miao & Alvis Brazma & Irene Papatheodorou, 2023. "Benchmarking strategies for cross-species integration of single-cell RNA sequencing data," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Ruihua Zhang & Qun Liu & Shanshan Pan & Yingying Zhang & Yating Qin & Xiao Du & Zengbao Yuan & Yongrui Lu & Yue Song & Mengqi Zhang & Nannan Zhang & Jie Ma & Zhe Zhang & Xiaodong Jia & Kun Wang & Shun, 2023. "A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Baptiste Lamarthée & Jasper Callemeyn & Yannick Van Herck & Asier Antoranz & Dany Anglicheau & Patrick Boada & Jan Ulrich Becker & Tim Debyser & Frederik De Smet & Katrien De Vusser & Maëva Eloudzeri , 2023. "Transcriptional and spatial profiling of the kidney allograft unravels a central role for FcyRIII+ innate immune cells in rejection," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
- Shenghao Li & Hui Guo & Simai Zhang & Yizhou Li & Menglong Li, 2023. "Attention-based deep clustering method for scRNA-seq cell type identification," PLOS Computational Biology, Public Library of Science, vol. 19(11), pages 1-19, November.
- Yoshiharu Muto & Eryn E. Dixon & Yasuhiro Yoshimura & Haojia Wu & Kohei Omachi & Nicolas Ledru & Parker C. Wilson & Andrew J. King & N. Eric Olson & Marvin G. Gunawan & Jay J. Kuo & Jennifer H. Cox & , 2022. "Defining cellular complexity in human autosomal dominant polycystic kidney disease by multimodal single cell analysis," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
- Jingyang Qian & Hudong Bao & Xin Shao & Yin Fang & Jie Liao & Zhuo Chen & Chengyu Li & Wenbo Guo & Yining Hu & Anyao Li & Yue Yao & Xiaohui Fan & Yiyu Cheng, 2024. "Simulating multiple variability in spatially resolved transcriptomics with scCube," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
- Dongsheng Chen & Jian Sun & Jiacheng Zhu & Xiangning Ding & Tianming Lan & Xiran Wang & Weiying Wu & Zhihua Ou & Linnan Zhu & Peiwen Ding & Haoyu Wang & Lihua Luo & Rong Xiang & Xiaoling Wang & Jiayin, 2021. "Single cell atlas for 11 non-model mammals, reptiles and birds," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
- Xiaochen Wang & Maosheng Cheng & Shuang Chen & Caihua Zhang & Rongsong Ling & Shuqing Qiu & Ke Chen & Bin Zhou & Qiuli Li & Wenbin Lei & Demeng Chen, 2025. "Resistance to anti-LAG-3 plus anti-PD-1 therapy in head and neck cancer is mediated by Sox9+ tumor cells interaction with Fpr1+ neutrophils," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
- Yanchuan Li & Huamei Li & Cheng Peng & Ge Meng & Yijun Lu & Honglin Liu & Li Cui & Huan Zhou & Zhu Xu & Lingyun Sun & Lihong Liu & Qing Xiong & Beicheng Sun & Shiping Jiao, 2024. "Unraveling the spatial organization and development of human thymocytes through integration of spatial transcriptomics and single-cell multi-omics profiling," Nature Communications, Nature, vol. 15(1), pages 1-25, December.
- Tim Flerlage & Jeremy Chase Crawford & E. Kaitlynn Allen & Danielle Severns & Shaoyuan Tan & Sherri Surman & Granger Ridout & Tanya Novak & Adrienne Randolph & Alina N. West & Paul G. Thomas, 2023. "Single cell transcriptomics identifies distinct profiles in pediatric acute respiratory distress syndrome," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
- Shirong Cao & Yu Pan & Andrew S. Terker & Juan Pablo Arroyo Ornelas & Yinqiu Wang & Jiaqi Tang & Aolei Niu & Sarah Abu Kar & Mengdi Jiang & Wentian Luo & Xinyu Dong & Xiaofeng Fan & Suwan Wang & Matth, 2023. "Epidermal growth factor receptor activation is essential for kidney fibrosis development," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Christopher Bono & Yang Liu & Alexander Ferrena & Aneesa Valentine & Deyou Zheng & Bernice E. Morrow, 2023. "Single-cell transcriptomics uncovers a non-autonomous Tbx1-dependent genetic program controlling cardiac neural crest cell development," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
- Yue Pang & Yating Qin & Zeyu Du & Qun Liu & Jin Zhang & Kai Han & Jiali Lu & Zengbao Yuan & Jun Li & Shanshan Pan & Xinrui Dong & Mengyang Xu & Dantong Wang & Shuo Li & Zhen Li & Yadong Chen & Zhishen, 2025. "Single-cell transcriptome atlas of lamprey exploring Natterin- induced white adipose tissue browning," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
- Jingyang Qian & Xin Shao & Hudong Bao & Yin Fang & Wenbo Guo & Chengyu Li & Anyao Li & Hua Hua & Xiaohui Fan, 2025. "Identification and characterization of cell niches in tissue from spatial omics data at single-cell resolution," Nature Communications, Nature, vol. 16(1), pages 1-21, December.
- Qingfei Pan & Liang Ding & Siarhei Hladyshau & Xiangyu Yao & Jiayu Zhou & Lei Yan & Yogesh Dhungana & Hao Shi & Chenxi Qian & Xinran Dong & Chad Burdyshaw & Joao Pedro Veloso & Alireza Khatamian & Zhe, 2025. "scMINER: a mutual information-based framework for clustering and hidden driver inference from single-cell transcriptomics data," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
- Lichun Ma & Sophia Heinrich & Limin Wang & Friederike L. Keggenhoff & Subreen Khatib & Marshonna Forgues & Michael Kelly & Stephen M. Hewitt & Areeba Saif & Jonathan M. Hernandez & Donna Mabry & Roman, 2022. "Multiregional single-cell dissection of tumor and immune cells reveals stable lock-and-key features in liver cancer," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Qingnan Liang & Yuefan Huang & Shan He & Ken Chen, 2023. "Pathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Maximilian Reck & David P. Baird & Stefan Veizades & Callum Sutherland & Rachel M. B. Bell & Heeyoun Hur & Carolynn Cairns & Piotr P. Janas & Ross Campbell & Andy Nam & Wei Yang & Nathan Schurman & Cl, 2025. "Multiomic analysis of human kidney disease identifies a tractable inflammatory and pro-fibrotic tubular cell phenotype," Nature Communications, Nature, vol. 16(1), pages 1-23, December.
- Faith H. Brennan & Yang Li & Cankun Wang & Anjun Ma & Qi Guo & Yi Li & Nicole Pukos & Warren A. Campbell & Kristina G. Witcher & Zhen Guan & Kristina A. Kigerl & Jodie C. E. Hall & Jonathan P. Godbout, 2022. "Microglia coordinate cellular interactions during spinal cord repair in mice," Nature Communications, Nature, vol. 13(1), pages 1-20, December.
- Lulu Shang & Jennifer A Smith & Xiang Zhou, 2020. "Leveraging gene co-expression patterns to infer trait-relevant tissues in genome-wide association studies," PLOS Genetics, Public Library of Science, vol. 16(4), pages 1-30, April.
- Sandra Curras-Alonso & Juliette Soulier & Thomas Defard & Christian Weber & Sophie Heinrich & Hugo Laporte & Sophie Leboucher & Sonia Lameiras & Marie Dutreix & Vincent Favaudon & Florian Massip & Tho, 2023. "An interactive murine single-cell atlas of the lung responses to radiation injury," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Hinako M Takase & Tappei Mishina & Tetsutaro Hayashi & Mika Yoshimura & Mariko Kuse & Itoshi Nikaido & Tomoya S Kitajima, 2024. "Transcriptomic signatures of WNT-driven pathways and granulosa cell-oocyte interactions during primordial follicle activation," PLOS ONE, Public Library of Science, vol. 19(10), pages 1-26, October.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31388-z. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.