IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-30929-w.html
   My bibliography  Save this article

Ligand recognition and biased agonism of the D1 dopamine receptor

Author

Listed:
  • Xiao Teng

    (Tsinghua University
    National Institute of Biological Sciences)

  • Sijia Chen

    (National Institute of Biological Sciences
    Graduate School of Peking Union Medical College)

  • Yingying Nie

    (National Institute of Biological Sciences)

  • Peng Xiao

    (Shandong University)

  • Xiao Yu

    (Shandong University)

  • Zhenhua Shao

    (Sichuan University)

  • Sanduo Zheng

    (Tsinghua University
    National Institute of Biological Sciences
    Graduate School of Peking Union Medical College)

Abstract

Dopamine receptors are widely distributed in the central nervous system and are important therapeutic targets for treatment of various psychiatric and neurological diseases. Here, we report three cryo-electron microscopy structures of the D1 dopamine receptor (D1R)-Gs complex bound to two agonists, fenoldopam and tavapadon, and a positive allosteric modulator LY3154207. The structure reveals unusual binding of two fenoldopam molecules, one to the orthosteric binding pocket (OBP) and the other to the extended binding pocket (EBP). In contrast, one elongated tavapadon molecule binds to D1R, extending from OBP to EBP. Moreover, LY3154207 stabilizes the second intracellular loop of D1R in an alpha helical conformation to efficiently engage the G protein. Through a combination of biochemical, biophysical and cellular assays, we further show that the broad conformation stabilized by two fenoldopam molecules and interaction between TM5 and the agonist are important for biased signaling of D1R.

Suggested Citation

  • Xiao Teng & Sijia Chen & Yingying Nie & Peng Xiao & Xiao Yu & Zhenhua Shao & Sanduo Zheng, 2022. "Ligand recognition and biased agonism of the D1 dopamine receptor," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30929-w
    DOI: 10.1038/s41467-022-30929-w
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-30929-w
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-022-30929-w?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Sanduo Zheng & Nohely Abreu & Joshua Levitz & Andrew C. Kruse, 2019. "Structural basis for KCTD-mediated rapid desensitization of GABAB signalling," Nature, Nature, vol. 567(7746), pages 127-131, March.
    2. Luyu Fan & Liang Tan & Zhangcheng Chen & Jianzhong Qi & Fen Nie & Zhipu Luo & Jianjun Cheng & Sheng Wang, 2020. "Haloperidol bound D2 dopamine receptor structure inspired the discovery of subtype selective ligands," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
    3. Bingfa Sun & Dan Feng & Matthew Ling-Hon Chu & Inbar Fish & Silvia Lovera & Zara A. Sands & Sebastian Kelm & Anne Valade & Martyn Wood & Tom Ceska & Tong Sun Kobilka & Florence Lebon & Brian K. Kobilk, 2021. "Crystal structure of dopamine D1 receptor in complex with G protein and a non-catechol agonist," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    4. David L. Gray & John A. Allen & Scot Mente & Rebecca E. O’Connor & George J. DeMarco & Ivan Efremov & Patrick Tierney & Dmitri Volfson & Jennifer Davoren & Edward Guilmette & Michelle Salafia & Rouba , 2018. "Impaired β-arrestin recruitment and reduced desensitization by non-catechol agonists of the D1 dopamine receptor," Nature Communications, Nature, vol. 9(1), pages 1-17, December.
    5. Andrew C. Kruse & Aaron M. Ring & Aashish Manglik & Jianxin Hu & Kelly Hu & Katrin Eitel & Harald Hübner & Els Pardon & Celine Valant & Patrick M. Sexton & Arthur Christopoulos & Christian C. Felder &, 2013. "Activation and allosteric modulation of a muscarinic acetylcholine receptor," Nature, Nature, vol. 504(7478), pages 101-106, December.
    6. Tao Che & Justin English & Brian E. Krumm & Kuglae Kim & Els Pardon & Reid H. J. Olsen & Sheng Wang & Shicheng Zhang & Jeffrey F. Diberto & Noah Sciaky & F. Ivy Carroll & Jan Steyaert & Daniel Wacker , 2020. "Nanobody-enabled monitoring of kappa opioid receptor states," Nature Communications, Nature, vol. 11(1), pages 1-12, December.
    7. Jie Yin & Kuang-Yui M. Chen & Mary J. Clark & Mahdi Hijazi & Punita Kumari & Xiao-chen Bai & Roger K. Sunahara & Patrick Barth & Daniel M. Rosenbaum, 2020. "Structure of a D2 dopamine receptor–G-protein complex in a lipid membrane," Nature, Nature, vol. 584(7819), pages 125-129, August.
    8. Sheng Wang & Tao Che & Anat Levit & Brian K. Shoichet & Daniel Wacker & Bryan L. Roth, 2018. "Structure of the D2 dopamine receptor bound to the atypical antipsychotic drug risperidone," Nature, Nature, vol. 555(7695), pages 269-273, March.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Yingying Nie & Zeming Qiu & Sijia Chen & Zhao Chen & Xiaocui Song & Yan Ma & Niu Huang & Jason G. Cyster & Sanduo Zheng, 2023. "Specific binding of GPR174 by endogenous lysophosphatidylserine leads to high constitutive Gs signaling," Nature Communications, Nature, vol. 14(1), pages 1-12, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Geng Chen & Jun Xu & Asuka Inoue & Maximilian F. Schmidt & Chen Bai & Qiuyuan Lu & Peter Gmeiner & Zheng Liu & Yang Du, 2022. "Activation and allosteric regulation of the orphan GPR88-Gi1 signaling complex," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    2. Yosuke Toyoda & Angqi Zhu & Fang Kong & Sisi Shan & Jiawei Zhao & Nan Wang & Xiaoou Sun & Linqi Zhang & Chuangye Yan & Brian K. Kobilka & Xiangyu Liu, 2023. "Structural basis of α1A-adrenergic receptor activation and recognition by an extracellular nanobody," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    3. Amal El Daibani & Joseph M. Paggi & Kuglae Kim & Yianni D. Laloudakis & Petr Popov & Sarah M. Bernhard & Brian E. Krumm & Reid H. J. Olsen & Jeffrey Diberto & F. Ivy Carroll & Vsevolod Katritch & Bern, 2023. "Molecular mechanism of biased signaling at the kappa opioid receptor," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    4. Noriyuki Uchida & Ai Kohata & Kou Okuro & Annalisa Cardellini & Chiara Lionello & Eric A. Zizzi & Marco A. Deriu & Giovanni M. Pavan & Michio Tomishige & Takaaki Hikima & Takuzo Aida, 2022. "Reconstitution of microtubule into GTP-responsive nanocapsules," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    5. Na Wang & Xinheng He & Jing Zhao & Hualiang Jiang & Xi Cheng & Yu Xia & H. Eric Xu & Yuanzheng He, 2022. "Structural basis of leukotriene B4 receptor 1 activation," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    6. Susanne Prokop & Péter Ábrányi-Balogh & Benjámin Barti & Márton Vámosi & Miklós Zöldi & László Barna & Gabriella M. Urbán & András Dávid Tóth & Barna Dudok & Attila Egyed & Hui Deng & Gian Marco Leggi, 2021. "PharmacoSTORM nanoscale pharmacology reveals cariprazine binding on Islands of Calleja granule cells," Nature Communications, Nature, vol. 12(1), pages 1-19, December.
    7. Zoe Köck & Kilian Schnelle & Margherita Persechino & Simon Umbach & Hannes Schihada & Dovile Januliene & Kristian Parey & Steffen Pockes & Peter Kolb & Volker Dötsch & Arne Möller & Daniel Hilger & Fr, 2024. "Cryo-EM structure of cell-free synthesized human histamine 2 receptor/Gs complex in nanodisc environment," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    8. Jie Yin & Yanyong Kang & Aaron P. McGrath & Karen Chapman & Megan Sjodt & Eiji Kimura & Atsutoshi Okabe & Tatsuki Koike & Yuhei Miyanohana & Yuji Shimizu & Rameshu Rallabandi & Peng Lian & Xiaochen Ba, 2022. "Molecular mechanism of the wake-promoting agent TAK-925," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    9. Wessel A. C. Burger & Vi Pham & Ziva Vuckovic & Alexander S. Powers & Jesse I. Mobbs & Yianni Laloudakis & Alisa Glukhova & Denise Wootten & Andrew B. Tobin & Patrick M. Sexton & Steven M. Paul & Chri, 2023. "Xanomeline displays concomitant orthosteric and allosteric binding modes at the M4 mAChR," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    10. Yong-Seok Kim & Jun-Hee Yeon & Woori Ko & Byung-Chang Suh, 2023. "Two-step structural changes in M3 muscarinic receptor activation rely on the coupled Gq protein cycle," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    11. Yang Yang & Hye Jin Kang & Ruogu Gao & Jingjing Wang & Gye Won Han & Jeffrey F. DiBerto & Lijie Wu & Jiahui Tong & Lu Qu & Yiran Wu & Ryan Pileski & Xuemei Li & Xuejun Cai Zhang & Suwen Zhao & Terry K, 2023. "Structural insights into the human niacin receptor HCA2-Gi signalling complex," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    12. Joshua A. Lees & João M. Dias & Francis Rajamohan & Jean-Philippe Fortin & Rebecca O’Connor & Jimmy X. Kong & Emily A. G. Hughes & Ethan L. Fisher & Jamison B. Tuttle & Gabrielle Lovett & Bethany L. K, 2023. "An inverse agonist of orphan receptor GPR61 acts by a G protein-competitive allosteric mechanism," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    13. Xinyan Zhu & Yu Qian & Xiaowan Li & Zhenmei Xu & Ruixue Xia & Na Wang & Jiale Liang & Han Yin & Anqi Zhang & Changyou Guo & Guangfu Wang & Yuanzheng He, 2022. "Structural basis of adhesion GPCR GPR110 activation by stalk peptide and G-proteins coupling," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    14. Yuxia Qian & Jiening Wang & Linlin Yang & Yanru Liu & Lina Wang & Wei Liu & Yun Lin & Hong Yang & Lixin Ma & Sheng Ye & Shan Wu & Anna Qiao, 2022. "Activation and signaling mechanism revealed by GPR119-Gs complex structures," Nature Communications, Nature, vol. 13(1), pages 1-10, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30929-w. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.