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Structural basis of adhesion GPCR GPR110 activation by stalk peptide and G-proteins coupling

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  • Xinyan Zhu

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Yu Qian

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Xiaowan Li

    (Laboratory of Neuroscience, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Zhenmei Xu

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Ruixue Xia

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Na Wang

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Jiale Liang

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Han Yin

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Anqi Zhang

    (HIT Center for Life Sciences, School of Life Science and Technology, Harbin Institute of Technology)

  • Changyou Guo

    (HIT Center for Life Sciences, School of Life Science and Technology, Harbin Institute of Technology)

  • Guangfu Wang

    (Laboratory of Neuroscience, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Yuanzheng He

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

Abstract

Adhesion G protein-coupled receptors (aGPCRs) are keys of many physiological events and attractive targets for various diseases. aGPCRs are also known to be capable of self-activation via an autoproteolysis process that removes the inhibitory GAIN domain on the extracellular side of receptor and releases a stalk peptide to bind and activate the transmembrane side of receptor. However, the detailed mechanism of aGPCR activation remains elusive. Here, we report the cryo-electron microscopy structures of GPR110 (ADGRF1), a member of aGPCR, in complex with Gq, Gs, Gi, G12 and G13. The structures reveal distinctive ligand engaging model and activation conformations of GPR110. The structures also unveil the rarely explored GPCR/G12 and GPCR/G13 engagements. A comparison of Gq, Gs, Gi, G12 and G13 engagements with GPR110 reveals details of G-protein engagement, including a dividing point at the far end of the alpha helix 5 (αH5) of Gα subunit that separates Gq/Gs engagements from Gi/G12/G13 engagements. This is also where Gq/Gs bind the receptor through both hydrophobic and polar interaction, while Gi/G12/G13 engage receptor mainly through hydrophobic interaction. We further provide physiological evidence of GPR110 activation via stalk peptide. Taken together, our study fills the missing information of GPCR/G-protein engagement and provides a framework for understanding aGPCR activation and GPR110 signaling.

Suggested Citation

  • Xinyan Zhu & Yu Qian & Xiaowan Li & Zhenmei Xu & Ruixue Xia & Na Wang & Jiale Liang & Han Yin & Anqi Zhang & Changyou Guo & Guangfu Wang & Yuanzheng He, 2022. "Structural basis of adhesion GPCR GPR110 activation by stalk peptide and G-proteins coupling," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33173-4
    DOI: 10.1038/s41467-022-33173-4
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    as
    1. Yu-Qi Ping & Chunyou Mao & Peng Xiao & Ru-Jia Zhao & Yi Jiang & Zhao Yang & Wen-Tao An & Dan-Dan Shen & Fan Yang & Huibing Zhang & Changxiu Qu & Qingya Shen & Caiping Tian & Zi-jian Li & Shaolong Li &, 2021. "Structures of the glucocorticoid-bound adhesion receptor GPR97–Go complex," Nature, Nature, vol. 589(7843), pages 620-626, January.
    2. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    3. Na Wang & Xinheng He & Jing Zhao & Hualiang Jiang & Xi Cheng & Yu Xia & H. Eric Xu & Yuanzheng He, 2022. "Structural basis of leukotriene B4 receptor 1 activation," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    4. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    5. Jia Duan & Dan-dan Shen & X. Edward Zhou & Peng Bi & Qiu-feng Liu & Yang-xia Tan & You-wen Zhuang & Hui-bing Zhang & Pei-yu Xu & Si-Jie Huang & Shan-shan Ma & Xin-heng He & Karsten Melcher & Yan Zhang, 2020. "Cryo-EM structure of an activated VIP1 receptor-G protein complex revealed by a NanoBiT tethering strategy," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
    6. Shoji Maeda & Antoine Koehl & Hugues Matile & Hongli Hu & Daniel Hilger & Gebhard F. X. Schertler & Aashish Manglik & Georgios Skiniotis & Roger J. P. Dawson & Brian K. Kobilka, 2018. "Development of an antibody fragment that stabilizes GPCR/G-protein complexes," Nature Communications, Nature, vol. 9(1), pages 1-9, December.
    7. Xiangli Qu & Na Qiu & Mu Wang & Bingjie Zhang & Juan Du & Zhiwei Zhong & Wei Xu & Xiaojing Chu & Limin Ma & Cuiying Yi & Shuo Han & Wenqing Shui & Qiang Zhao & Beili Wu, 2022. "Structural basis of tethered agonism of the adhesion GPCRs ADGRD1 and ADGRF1," Nature, Nature, vol. 604(7907), pages 779-785, April.
    8. Tilman Flock & Alexander S. Hauser & Nadia Lund & David E. Gloriam & Santhanam Balaji & M. Madan Babu, 2017. "Selectivity determinants of GPCR–G-protein binding," Nature, Nature, vol. 545(7654), pages 317-322, May.
    9. Yue Wang & Shimeng Guo & Youwen Zhuang & Ying Yun & Peiyu Xu & Xinheng He & Jia Guo & Wanchao Yin & H. Eric Xu & Xin Xie & Yi Jiang, 2021. "Molecular recognition of an acyl-peptide hormone and activation of ghrelin receptor," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    10. Peng Xiao & Shengchao Guo & Xin Wen & Qing-Tao He & Hui Lin & Shen-Ming Huang & Lu Gou & Chao Zhang & Zhao Yang & Ya-Ni Zhong & Chuan-Cheng Yang & Yu Li & Zheng Gong & Xiao-Na Tao & Zhi-Shuai Yang & Y, 2022. "Tethered peptide activation mechanism of the adhesion GPCRs ADGRG2 and ADGRG4," Nature, Nature, vol. 604(7907), pages 771-778, April.
    11. Jie Yin & Kuang-Yui M. Chen & Mary J. Clark & Mahdi Hijazi & Punita Kumari & Xiao-chen Bai & Roger K. Sunahara & Patrick Barth & Daniel M. Rosenbaum, 2020. "Structure of a D2 dopamine receptor–G-protein complex in a lipid membrane," Nature, Nature, vol. 584(7819), pages 125-129, August.
    12. Ji-Won Lee & Bill X. Huang & HeungSun Kwon & Md Abdur Rashid & Giorgi Kharebava & Abhishek Desai & Samarjit Patnaik & Juan Marugan & Hee-Yong Kim, 2016. "Orphan GPR110 (ADGRF1) targeted by N-docosahexaenoylethanolamine in development of neurons and cognitive function," Nature Communications, Nature, vol. 7(1), pages 1-16, December.
    13. Ximena Barros-Álvarez & Robert M. Nwokonko & Alexander Vizurraga & Donna Matzov & Feng He & Makaía M. Papasergi-Scott & Michael J. Robertson & Ouliana Panova & Eliane Hadas Yardeni & Alpay B. Seven & , 2022. "The tethered peptide activation mechanism of adhesion GPCRs," Nature, Nature, vol. 604(7907), pages 757-762, April.
    14. Yan Zhang & Bingfa Sun & Dan Feng & Hongli Hu & Matthew Chu & Qianhui Qu & Jeffrey T. Tarrasch & Shane Li & Tong Sun Kobilka & Brian K. Kobilka & Georgios Skiniotis, 2017. "Cryo-EM structure of the activated GLP-1 receptor in complex with a G protein," Nature, Nature, vol. 546(7657), pages 248-253, June.
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    3. Daniel T. D. Jones & Andrew N. Dates & Shaun D. Rawson & Maggie M. Burruss & Colin H. Lipper & Stephen C. Blacklow, 2023. "Tethered agonist activated ADGRF1 structure and signalling analysis reveal basis for G protein coupling," Nature Communications, Nature, vol. 14(1), pages 1-13, December.

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