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Molecular mechanism of biased signaling at the kappa opioid receptor

Author

Listed:
  • Amal El Daibani

    (Washington University School of Medicine
    University of Health Sciences & Pharmacy and Washington University School of Medicine)

  • Joseph M. Paggi

    (Stanford University)

  • Kuglae Kim

    (University of North Carolina School of Medicine
    Yonsei University)

  • Yianni D. Laloudakis

    (Stanford University)

  • Petr Popov

    (iMolecule, Skolkovo Institute of Science and Technology)

  • Sarah M. Bernhard

    (Washington University School of Medicine
    University of Health Sciences & Pharmacy and Washington University School of Medicine)

  • Brian E. Krumm

    (University of North Carolina School of Medicine)

  • Reid H. J. Olsen

    (University of North Carolina School of Medicine)

  • Jeffrey Diberto

    (University of North Carolina School of Medicine)

  • F. Ivy Carroll

    (Research Triangle Institute)

  • Vsevolod Katritch

    (University of Southern California)

  • Bernhard Wünsch

    (Universität Münster)

  • Ron O. Dror

    (Stanford University
    Stanford University School of Medicine)

  • Tao Che

    (Washington University School of Medicine
    University of Health Sciences & Pharmacy and Washington University School of Medicine)

Abstract

The κ-opioid receptor (KOR) has emerged as an attractive drug target for pain management without addiction, and biased signaling through particular pathways of KOR may be key to maintaining this benefit while minimizing side-effect liabilities. As for most G protein-coupled receptors (GPCRs), however, the molecular mechanisms of ligand-specific signaling at KOR have remained unclear. To better understand the molecular determinants of KOR signaling bias, we apply structure determination, atomic-level molecular dynamics (MD) simulations, and functional assays. We determine a crystal structure of KOR bound to the G protein-biased agonist nalfurafine, the first approved KOR-targeting drug. We also identify an arrestin-biased KOR agonist, WMS-X600. Using MD simulations of KOR bound to nalfurafine, WMS-X600, and a balanced agonist U50,488, we identify three active-state receptor conformations, including one that appears to favor arrestin signaling over G protein signaling and another that appears to favor G protein signaling over arrestin signaling. These results, combined with mutagenesis validation, provide a molecular explanation of how agonists achieve biased signaling at KOR.

Suggested Citation

  • Amal El Daibani & Joseph M. Paggi & Kuglae Kim & Yianni D. Laloudakis & Petr Popov & Sarah M. Bernhard & Brian E. Krumm & Reid H. J. Olsen & Jeffrey Diberto & F. Ivy Carroll & Vsevolod Katritch & Bern, 2023. "Molecular mechanism of biased signaling at the kappa opioid receptor," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37041-7
    DOI: 10.1038/s41467-023-37041-7
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    References listed on IDEAS

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    1. Andrew J. Y. Jones & Thomas H. Harman & Matthew Harris & Oliver E. Lewis & Graham Ladds & Daniel Nietlispach, 2024. "Binding kinetics drive G protein subtype selectivity at the β1-adrenergic receptor," Nature Communications, Nature, vol. 15(1), pages 1-17, December.

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