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Estimating Time-to-Death and Determining Risk Predictors for Heart Failure Patients: Bayesian AFT Shared Frailty Models with the INLA Method

Author

Listed:
  • Tafese Ashine

    (Department of Statistics, Assosa University, Assosa 5220, Ethiopia)

  • Habte Tadesse Likassa

    (Department of Statistics, Addis Ababa University, Addis Ababa 1176, Ethiopia
    College of Health Solutions, Arizona State University, Phoenix, AZ 85004, USA)

  • Ding-Geng Chen

    (College of Health Solutions, Arizona State University, Phoenix, AZ 85004, USA
    Department of Statistics, University of Pretoria, Pretoria 0028, South Africa)

Abstract

Heart failure is a major global health concern, especially in Ethiopia. Numerous studies have analyzed heart failure data to inform decision-making, but these often struggle with limitations to accurately capture death dynamics and account for within-cluster dependence and heterogeneity. Addressing these limitations, this study aims to incorporate dependence and analyze heart failure data to estimate survival time and identify risk factors affecting patient survival. The data, obtained from 497 patients at Jimma University Medical Center in Ethiopia were collected between July 2015 and January 2019. Residence was considered as the clustering factor in the analysis. We employed the Bayesian accelerated failure time (AFT), and Bayesian AFT shared gamma frailty models, comparing their performance using the Deviance Information Criterion (DIC) and Watanabe–Akaike Information Criterion (WAIC). The Bayesian log-normal AFT shared gamma frailty model had the lowest DIC and WAIC, with well-capturing cluster dependency that was attributed to unobserved heterogeneity between patient residences. Unlike other methods that use Markov-Chain Monte-Carlo (MCMC), we applied the Integrated Nested Laplace Approximation (INLA) to reduce computational load. The study found that 39.44% of patients died, while 60.56% were censored, with a median survival time of 34 months. Another interesting finding of this study is that adding frailty into the Bayesian AFT models boosted the performance in fitting the heart failure dataset. Significant factors reducing survival time included age, chronic kidney disease, heart failure history, diabetes, heart failure etiology, hypertension, anemia, smoking, and heart failure stage.

Suggested Citation

  • Tafese Ashine & Habte Tadesse Likassa & Ding-Geng Chen, 2024. "Estimating Time-to-Death and Determining Risk Predictors for Heart Failure Patients: Bayesian AFT Shared Frailty Models with the INLA Method," Stats, MDPI, vol. 7(3), pages 1-18, September.
  • Handle: RePEc:gam:jstats:v:7:y:2024:i:3:p:63-1083:d:1483632
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    References listed on IDEAS

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    1. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    2. Sara Martino & Rupali Akerkar & Håvard Rue, 2011. "Approximate Bayesian Inference for Survival Models," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 38(3), pages 514-528, September.
    3. Zhang, Jiajia & Peng, Yingwei, 2007. "An alternative estimation method for the accelerated failure time frailty model," Computational Statistics & Data Analysis, Elsevier, vol. 51(9), pages 4413-4423, May.
    4. Guosheng Yin & Joseph G. Ibrahim, 2005. "A Class of Bayesian Shared Gamma Frailty Models with Multivariate Failure Time Data," Biometrics, The International Biometric Society, vol. 61(1), pages 208-216, March.
    5. James Vaupel & Kenneth Manton & Eric Stallard, 1979. "The impact of heterogeneity in individual frailty on the dynamics of mortality," Demography, Springer;Population Association of America (PAA), vol. 16(3), pages 439-454, August.
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