IDEAS home Printed from https://ideas.repec.org/a/gam/jlands/v9y2020i9p329-d414356.html
   My bibliography  Save this article

Effects of Different Fertilizer Treatments on Rhizosphere Soil Microbiome Composition and Functions

Author

Listed:
  • Yanan Li

    (College of Resources and Environment, Jilin Agricultural University, Changchun 130000, China
    Key Laboratory of Soil Resource Sustainable Utilization for Jilin Province Commodity Grain Bases, Changchun 130000, China)

  • Chengyu Wang

    (College of Resources and Environment, Jilin Agricultural University, Changchun 130000, China
    Key Laboratory of Soil Resource Sustainable Utilization for Jilin Province Commodity Grain Bases, Changchun 130000, China)

  • Tianye Wang

    (College of Resources and Environment, Jilin Agricultural University, Changchun 130000, China)

  • Yutao Liu

    (Qiqihar Branch Institute of Heilongjiang Academy of Agricultural Sciences, Qiqihar 161000, China)

  • Shuxia Jia

    (Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China)

  • Yunhang Gao

    (College of Animal Science and Technology, Jilin Agricultural University, Changchun 130000, China)

  • Shuxia Liu

    (College of Resources and Environment, Jilin Agricultural University, Changchun 130000, China
    Key Laboratory of Soil Resource Sustainable Utilization for Jilin Province Commodity Grain Bases, Changchun 130000, China)

Abstract

Fertilization influences the soil microbiome. However, little is known about the effects of long-term fertilization on soil microbial metabolic pathways. In this study, we investigated the soil microbiome composition and function and microbial participation in the N cycle according to the Kyoto Encyclopedia of Genes and Genomes (KEGG) and gene ontology (GO) functional annotation of different genes in a metagenomic analysis after long-term fertilization. Fertilizer application significantly changed the soil C/N ratio. Chemical fertilizer (NPK) treatment decreased soil pH, and chemical fertilizer combined with straw (NPK+S0.5) treatment increased ammonium nitrogen (NH 4 + -N) but decreased nitrate nitrogen (NO 3 − -N). NPK, NPK+S0.5 and S0.5 applications did not change the soil microbiome composition or dominant phylum but changed the relative abundances of microbiome components. Moreover, fertilizer significantly influenced metabolic processes, cellular processes and single-organism processes. Compared with a no-fertilizer treatment (CK), the NPK treatment resulted in more differentially expressed gene (DEG) pathways than the NPK+S0.5 and S0.5 treatments, and these pathways significantly correlated with soil nitrate nitrogen (NO 3 − -N), available phosphorus (AP) and the moisture content of soil (MC). KEGG analysis found that fertilizer application mainly affected the ribosome, photosynthesis and oxidative phosphorylation pathways. S0.5 and NPK+S0.5 increased microbial nitrogen fixation, and NPK and NPK+S0.5 decreased amoA and amoB and accelerated denitrification. Thus, organic fertilizer increased N fixation and nitrification, and inorganic N fertilizer accelerated denitrification. We found that the function of the soil microbiome under different fertilizer applications could be important for the rational application of fertilizer and for environmental and sustainable development.

Suggested Citation

  • Yanan Li & Chengyu Wang & Tianye Wang & Yutao Liu & Shuxia Jia & Yunhang Gao & Shuxia Liu, 2020. "Effects of Different Fertilizer Treatments on Rhizosphere Soil Microbiome Composition and Functions," Land, MDPI, vol. 9(9), pages 1-19, September.
    • Handle: RePEc:gam:jlands:v:9:y:2020:i:9:p:329-:d:414356
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/2073-445X/9/9/329/pdf
    Download Restriction: no
    File URL: https://www.mdpi.com/2073-445X/9/9/329/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Nicolas Gruber & James N. Galloway, 2008. "An Earth-system perspective of the global nitrogen cycle," Nature, Nature, vol. 451(7176), pages 293-296, January.
    2. Muhammad Tayyab & Waqar Islam & Yasir Arafat & Ziqin Pang & Caifang Zhang & Yu Lin & Muhammad Waqas & Sheng Lin & Wenxiong Lin & Hua Zhang, 2018. "Effect of Sugarcane Straw and Goat Manure on Soil Nutrient Transformation and Bacterial Communities," Sustainability, MDPI, vol. 10(7), pages 1-21, July.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Ruifeng Guo & Yuemei Ren & Guangbing Ren & Shou Zhang & Jing Feng, 2025. "Impacts of Fertilizers with Varying Nitrogen Contents on Millet Yield and Rhizosphere Soil Microbial Communities: Implications for Sustainable Agricultural Development," Sustainability, MDPI, vol. 17(4), pages 1-19, February.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Auguères, Anne-Sophie & Loreau, Michel, 2016. "Biotic regulation of non-limiting nutrient pools and coupling of biogeochemical cycles," Ecological Modelling, Elsevier, vol. 334(C), pages 1-7.
    2. Xiaochen Lu & Binjie Li & Guangsheng Chen, 2023. "Responses of Soil CO 2 Emission and Tree Productivity to Nitrogen and Phosphorus Additions in a Nitrogen-Rich Subtropical Chinese Fir Plantation," Sustainability, MDPI, vol. 15(12), pages 1-15, June.
    3. Jie Zhang & Jia Liu & Guilong Li & Meng Wu, 2024. "Screening Potential Nitrification Inhibitors through a Structure–Activity Relationship Study—The Case of Cinnamic Acid Derivatives," Sustainability, MDPI, vol. 16(13), pages 1-10, July.
    4. Huang, Suo & Bartlett, Paul & Arain, M. Altaf, 2016. "An analysis of global terrestrial carbon, water and energy dynamics using the carbon–nitrogen coupled CLASS-CTEMN+ model," Ecological Modelling, Elsevier, vol. 336(C), pages 36-56.
    5. L.J. Li & D.H. Zeng & R. Mao & Z.Y. Yu, 2012. "Nitrogen and phosphorus resorption of Artemisia scoparia, Chenopodium acuminatum, Cannabis sativa, and Phragmites communis under nitrogen and phosphorus additions in a semiarid grassland, China," Plant, Soil and Environment, Czech Academy of Agricultural Sciences, vol. 58(10), pages 446-451.
    6. Danica L. Lombardozzi & William R. Wieder & Gretchen Keppel-Aleks & Jiameng Lai & Zhenqi Luo & Ying Sun & Isla R. Simpson & David M. Lawrence & Gordon B. Bonan & Xin Lin & Charles D. Koven & Pierre Fr, 2025. "Agricultural fertilization significantly enhances amplitude of land-atmosphere CO2 exchange," Nature Communications, Nature, vol. 16(1), pages 1-9, December.
    7. Zhen-Zhen Zheng & Li-Wei Zheng & Min Nina Xu & Ehui Tan & David A. Hutchins & Wenchao Deng & Yao Zhang & Dalin Shi & Minhan Dai & Shuh-Ji Kao, 2020. "Substrate regulation leads to differential responses of microbial ammonia-oxidizing communities to ocean warming," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
    8. Qingsong Guan & Yiqiao Zhou & Shuo Li & Fan Yang & Rentao Liu, 2024. "Denitrification and Anammox and Feammox in the Yinchuan Yellow River wetland," Plant, Soil and Environment, Czech Academy of Agricultural Sciences, vol. 70(11), pages 731-738.
    9. Douglas, Niall Edward, 2008. "Modelling the Costs of Climate Change and its Costs of Mitigation: A Scientific Approach," MPRA Paper 13650, University Library of Munich, Germany.
    10. E. Harris & L. Yu & Y-P. Wang & J. Mohn & S. Henne & E. Bai & M. Barthel & M. Bauters & P. Boeckx & C. Dorich & M. Farrell & P. B. Krummel & Z. M. Loh & M. Reichstein & J. Six & M. Steinbacher & N. S., 2022. "Warming and redistribution of nitrogen inputs drive an increase in terrestrial nitrous oxide emission factor," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    11. Huang, Suo & Bartlett, Paul & Arain, M. Altaf, 2016. "Assessing nitrogen controls on carbon, water and energy exchanges in major plant functional types across North America using a carbon and nitrogen coupled ecosystem model," Ecological Modelling, Elsevier, vol. 323(C), pages 12-27.
    12. Faith M. Hartley & Aaron E. Maxwell & Rick E. Landenberger & Zachary J. Bortolot, 2022. "Forest Type Differentiation Using GLAD Phenology Metrics, Land Surface Parameters, and Machine Learning," Geographies, MDPI, vol. 2(3), pages 1-25, August.
    13. Geshere Abdisa Gurmesa & Ang Wang & Shanlong Li & Shushi Peng & Wim Vries & Per Gundersen & Philippe Ciais & Oliver L. Phillips & Erik A. Hobbie & Weixing Zhu & Knute Nadelhoffer & Yi Xi & Edith Bai &, 2022. "Retention of deposited ammonium and nitrate and its impact on the global forest carbon sink," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    14. Haoyu Jin & Chao Zhang & Siyu Meng & Qin Wang & Xiaokun Ding & Ling Meng & Yunyun Zhuang & Xiaohong Yao & Yang Gao & Feng Shi & Thomas Mock & Huiwang Gao, 2024. "Atmospheric deposition and river runoff stimulate the utilization of dissolved organic phosphorus in coastal seas," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    15. Sishuang Tang & Minghao Xie & Saerom Yu & Xun Zhan & Ruilin Wei & Maoyu Wang & Weixin Guan & Bowen Zhang & Yuyang Wang & Hua Zhou & Gengfeng Zheng & Yuanyue Liu & Jamie H. Warner & Guihua Yu, 2024. "General synthesis of high-entropy single-atom nanocages for electrosynthesis of ammonia from nitrate," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    16. Jadwiga Wyszkowska & Edyta Boros-Lajszner & Agata Borowik & Jan Kucharski, 2022. "The Role of Cellulose in Microbial Diversity Changes in the Soil Contaminated with Cadmium," Sustainability, MDPI, vol. 14(21), pages 1-28, October.
    17. Chao-Chen Hu & Xue-Yan Liu & Avery W. Driscoll & Yuan-Wen Kuang & E. N. Jack Brookshire & Xiao-Tao Lü & Chong-Juan Chen & Wei Song & Rong Mao & Cong-Qiang Liu & Benjamin Z. Houlton, 2024. "Global distribution and drivers of relative contributions among soil nitrogen sources to terrestrial plants," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
    18. Xianhui S. Wan & Hua-Xia Sheng & Li Liu & Hui Shen & Weiyi Tang & Wenbin Zou & Min N. Xu & Zhenzhen Zheng & Ehui Tan & Mingming Chen & Yao Zhang & Bess B. Ward & Shuh-Ji Kao, 2023. "Particle-associated denitrification is the primary source of N2O in oxic coastal waters," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    19. Yukio Watanabe & Wataru Aoki & Mitsuyoshi Ueda, 2021. "Sustainable Biological Ammonia Production towards a Carbon-Free Society," Sustainability, MDPI, vol. 13(17), pages 1-13, August.
    20. James Shortle & Richard D. Horan, 2017. "Nutrient Pollution: A Wicked Challenge for Economic Instruments," Water Economics and Policy (WEP), World Scientific Publishing Co. Pte. Ltd., vol. 3(02), pages 1-39, April.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jlands:v:9:y:2020:i:9:p:329-:d:414356. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.