Exact site frequency spectra of neutrally evolving tumors: A transition between power laws reveals a signature of cell viability
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DOI: 10.1016/j.tpb.2021.09.004
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- Rebecca A. Burrell & Nicholas McGranahan & Jiri Bartek & Charles Swanton, 2013. "The causes and consequences of genetic heterogeneity in cancer evolution," Nature, Nature, vol. 501(7467), pages 338-345, September.
- Benjamin Werner & Jack Case & Marc J. Williams & Ketevan Chkhaidze & Daniel Temko & Javier Fernández-Mateos & George D. Cresswell & Daniel Nichol & William Cross & Inmaculada Spiteri & Weini Huang & I, 2020. "Measuring single cell divisions in human tissues from multi-region sequencing data," Nature Communications, Nature, vol. 11(1), pages 1-9, December.
- Nicolas Champagnat & Amaury Lambert & Mathieu Richard, 2012. "Birth and Death Processes with Neutral Mutations," International Journal of Stochastic Analysis, Hindawi, vol. 2012, pages 1-20, December.
- Xiaowei Wu & Marek Kimmel, 2013. "Modeling Neutral Evolution Using an Infinite-Allele Markov Branching Process," International Journal of Stochastic Analysis, Hindawi, vol. 2013, pages 1-10, March.
- Ohtsuki, Hisashi & Innan, Hideki, 2017. "Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population," Theoretical Population Biology, Elsevier, vol. 117(C), pages 43-50.
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Keywords
Mathematical modeling; Branching processes; Exponentially growing populations; Site frequency spectrum; Infinite sites model; Cancer evolution;All these keywords.
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