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Effect of study area extent on the potential distribution of Species: A case study with models for Raoiella indica Hirst (Acari: Tenuipalpidae)

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  • Amaro, George
  • Fidelis, Elisangela Gomes
  • da Silva, Ricardo Siqueira
  • Marchioro, Cesar Augusto

Abstract

Ecological niche models are used to quantify the relationships between known occurrence records of a given species and environmental variables at these locations. Maxent is among the most widely used algorithms for modeling species distribution and has demonstrated better performance compared to other methods. However, the extent of the study area is a critical issue in the development of presence-only species distribution models because it encompasses the region used to extract the background points employed to characterize the environments accessible to the species. Thus, this study evaluated the effect of the extension of the study area on the species distribution modeling with the Maxent algorithm and occurrence data from the invasive species Raoiella indica Hirst (Acari: Tenuipalpidae). The increase in the study area extent inflated most of the threshold-dependent and -independent metrics used to assess model performance. The selection of the study area also affected the predicted suitable areas for the species (its potential distribution). The analysis shows that models developed with smaller study areas resulted in model overfitting and an increase in false-negative predictions. The extent of the area used during model training has a strong influence on the model outputs, with significant consequences for predicting the potential distribution of invasive species and thus for the areas under risk of invasion.

Suggested Citation

  • Amaro, George & Fidelis, Elisangela Gomes & da Silva, Ricardo Siqueira & Marchioro, Cesar Augusto, 2023. "Effect of study area extent on the potential distribution of Species: A case study with models for Raoiella indica Hirst (Acari: Tenuipalpidae)," Ecological Modelling, Elsevier, vol. 483(C).
  • Handle: RePEc:eee:ecomod:v:483:y:2023:i:c:s0304380023001850
    DOI: 10.1016/j.ecolmodel.2023.110454
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    References listed on IDEAS

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    1. Matthew P Hill & John S Terblanche, 2014. "Niche Overlap of Congeneric Invaders Supports a Single-Species Hypothesis and Provides Insight into Future Invasion Risk: Implications for Global Management of the Bactrocera dorsalis Complex," PLOS ONE, Public Library of Science, vol. 9(2), pages 1-12, February.
    2. Jarnevich, Catherine S. & Talbert, Marian & Morisette, Jeffery & Aldridge, Cameron & Brown, Cynthia S. & Kumar, Sunil & Manier, Daniel & Talbert, Colin & Holcombe, Tracy, 2017. "Minimizing effects of methodological decisions on interpretation and prediction in species distribution studies: An example with background selection," Ecological Modelling, Elsevier, vol. 363(C), pages 48-56.
    3. Sutton, G.F. & Martin, G.D., 2022. "Testing MaxEnt model performance in a novel geographic region using an intentionally introduced insect," Ecological Modelling, Elsevier, vol. 473(C).
    4. Shcheglovitova, Mariya & Anderson, Robert P., 2013. "Estimating optimal complexity for ecological niche models: A jackknife approach for species with small sample sizes," Ecological Modelling, Elsevier, vol. 269(C), pages 9-17.
    5. Jha, Ashish & J, Praveen & Nameer, P.O., 2022. "Contrasting occupancy models with presence-only models: Does accounting for detection lead to better predictions?," Ecological Modelling, Elsevier, vol. 472(C).
    6. Fernandez, Marc & Sillero, Neftali & Yesson, Chris, 2022. "To be or not to be: the role of absences in niche modelling for highly mobile species in dynamic marine environments," Ecological Modelling, Elsevier, vol. 471(C).
    7. Marchetto, Elisa & Da Re, Daniele & Tordoni, Enrico & Bazzichetto, Manuele & Zannini, Piero & Celebrin, Simone & Chieffallo, Ludovico & Malavasi, Marco & Rocchini, Duccio, 2023. "Testing the effect of sample prevalence and sampling methods on probability- and favourability-based SDMs," Ecological Modelling, Elsevier, vol. 477(C).
    8. Barve, Narayani & Barve, Vijay & Jiménez-Valverde, Alberto & Lira-Noriega, Andrés & Maher, Sean P. & Peterson, A. Townsend & Soberón, Jorge & Villalobos, Fabricio, 2011. "The crucial role of the accessible area in ecological niche modeling and species distribution modeling," Ecological Modelling, Elsevier, vol. 222(11), pages 1810-1819.
    9. Gengping Zhu & Wenjun Bu & Yubao Gao & Guoqing Liu, 2012. "Potential Geographic Distribution of Brown Marmorated Stink Bug Invasion (Halyomorpha halys)," PLOS ONE, Public Library of Science, vol. 7(2), pages 1-10, February.
    10. Corey J. A. Bradshaw & Boris Leroy & Céline Bellard & David Roiz & Céline Albert & Alice Fournier & Morgane Barbet-Massin & Jean-Michel Salles & Frédéric Simard & Franck Courchamp, 2016. "Massive yet grossly underestimated global costs of invasive insects," Nature Communications, Nature, vol. 7(1), pages 1-8, December.
    11. Andersen, Desiree & Litvinchuk, Spartak N. & Jang, Hoan Jin & Jiang, Jianping & Koo, Kyo Soung & Maslova, Irina & Kim, Daemin & Jang, Yikweon & Borzée, Amaël, 2022. "Incorporation of latitude-adjusted bioclimatic variables increases accuracy in species distribution models," Ecological Modelling, Elsevier, vol. 469(C).
    12. VanDerWal, Jeremy & Shoo, Luke P. & Graham, Catherine & Williams, Stephen E., 2009. "Selecting pseudo-absence data for presence-only distribution modeling: How far should you stray from what you know?," Ecological Modelling, Elsevier, vol. 220(4), pages 589-594.
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