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Prediction of multivariate responses with a selected number of principal components

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  • Koch, Inge
  • Naito, Kanta

Abstract

This paper proposes a new method and algorithm for predicting multivariate responses in a regression setting. Research into the classification of high dimension low sample size (HDLSS) data, in particular microarray data, has made considerable advances, but regression prediction for high-dimensional data with continuous responses has had less attention. Recently Bair et al. (2006) proposed an efficient prediction method based on supervised principal component regression (PCR). Motivated by the fact that using a larger number of principal components results in better regression performance, this paper extends the method of Bair et al. in several ways: a comprehensive variable ranking is combined with a selection of the best number of components for PCR, and the new method further extends to regression with multivariate responses. The new method is particularly suited to addressing HDLSS problems. Applications to simulated and real data demonstrate the performance of the new method. Comparisons with the findings of Bair et al. (2006) show that for high-dimensional data in particular the new ranking results in a smaller number of predictors and smaller errors.

Suggested Citation

  • Koch, Inge & Naito, Kanta, 2010. "Prediction of multivariate responses with a selected number of principal components," Computational Statistics & Data Analysis, Elsevier, vol. 54(7), pages 1791-1807, July.
    • Handle: RePEc:eee:csdana:v:54:y:2010:i:7:p:1791-1807
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    References listed on IDEAS

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    1. Bair, Eric & Hastie, Trevor & Paul, Debashis & Tibshirani, Robert, 2006. "Prediction by Supervised Principal Components," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 119-137, March.
    2. Laura J. van 't Veer & Hongyue Dai & Marc J. van de Vijver & Yudong D. He & Augustinus A. M. Hart & Mao Mao & Hans L. Peterse & Karin van der Kooy & Matthew J. Marton & Anke T. Witteveen & George J. S, 2002. "Gene expression profiling predicts clinical outcome of breast cancer," Nature, Nature, vol. 415(6871), pages 530-536, January.
    3. Leo Breiman & Jerome H. Friedman, 1997. "Predicting Multivariate Responses in Multiple Linear Regression," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 59(1), pages 3-54.
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    Cited by:

    1. Tsay, Ruey S. & Ando, Tomohiro, 2012. "Bayesian panel data analysis for exploring the impact of subprime financial crisis on the US stock market," Computational Statistics & Data Analysis, Elsevier, vol. 56(11), pages 3345-3365.
    2. Tamatani, Mitsuru & Koch, Inge & Naito, Kanta, 2012. "Pattern recognition based on canonical correlations in a high dimension low sample size context," Journal of Multivariate Analysis, Elsevier, vol. 111(C), pages 350-367.

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