IDEAS home Printed from https://ideas.repec.org/a/eee/csdana/v187y2023ics0167947323000968.html
   My bibliography  Save this article

Bayesian analysis of longitudinal data via empirical likelihood

Author

Listed:
  • Ouyang, Jiangrong
  • Bondell, Howard

Abstract

Longitudinal data consists of repeated observations that are typically correlated, which makes the likelihood-based inference challenging. This limits the use of Bayesian methods for longitudinal data in many general situations. To address this issue, empirical likelihood is used to develop a fully Bayesian method for analyzing longitudinal data based on a set of moment equations parallel to the form of generalized estimating equations. It is demonstrated in the context of two popular priors for Bayesian inference and regularization, the Laplace prior and the horseshoe prior. The proposed Bayesian shrinkage method performs well in both estimation accuracy and variable selection, while also providing a full quantification of uncertainty. The method is illustrated using a yeast cell-cycle microarray time course gene expression data set.

Suggested Citation

  • Ouyang, Jiangrong & Bondell, Howard, 2023. "Bayesian analysis of longitudinal data via empirical likelihood," Computational Statistics & Data Analysis, Elsevier, vol. 187(C).
  • Handle: RePEc:eee:csdana:v:187:y:2023:i:c:s0167947323000968
    DOI: 10.1016/j.csda.2023.107785
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0167947323000968
    Download Restriction: Full text for ScienceDirect subscribers only.

    File URL: https://libkey.io/10.1016/j.csda.2023.107785?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Chenlei Leng & Cheng Yong Tang, 2012. "Penalized empirical likelihood and growing dimensional general estimating equations," Biometrika, Biometrika Trust, vol. 99(3), pages 703-716.
    2. Sanjay Chaudhuri & Malay Ghosh, 2011. "Empirical likelihood for small area estimation," Biometrika, Biometrika Trust, vol. 98(2), pages 473-480.
    3. Carlos M. Carvalho & Nicholas G. Polson & James G. Scott, 2010. "The horseshoe estimator for sparse signals," Biometrika, Biometrika Trust, vol. 97(2), pages 465-480.
    4. Chen, S. X., 1994. "Empirical Likelihood Confidence Intervals for Linear Regression Coefficients," Journal of Multivariate Analysis, Elsevier, vol. 49(1), pages 24-40, April.
    5. Sanjay Chaudhuri & Debashis Mondal & Teng Yin, 2017. "Hamiltonian Monte Carlo sampling in Bayesian empirical likelihood computation," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 79(1), pages 293-320, January.
    6. Lan Wang & Jianhui Zhou & Annie Qu, 2012. "Penalized Generalized Estimating Equations for High-Dimensional Longitudinal Data Analysis," Biometrics, The International Biometric Society, vol. 68(2), pages 353-360, June.
    7. J. N. K. Rao & Changbao Wu, 2010. "Bayesian pseudo‐empirical‐likelihood intervals for complex surveys," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 72(4), pages 533-544, September.
    8. Nicole A. Lazar, 2003. "Bayesian empirical likelihood," Biometrika, Biometrika Trust, vol. 90(2), pages 319-326, June.
    9. Li, Daoji & Pan, Jianxin, 2013. "Empirical likelihood for generalized linear models with longitudinal data," Journal of Multivariate Analysis, Elsevier, vol. 114(C), pages 63-73.
    10. Song Chen, 1993. "On the accuracy of empirical likelihood confidence regions for linear regression model," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 45(4), pages 621-637, December.
    11. Johnson, Brent A. & Lin, D.Y. & Zeng, Donglin, 2008. "Penalized Estimating Functions and Variable Selection in Semiparametric Regression Models," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 672-680, June.
    12. Cheng Yong Tang & Chenlei Leng, 2010. "Penalized high-dimensional empirical likelihood," Biometrika, Biometrika Trust, vol. 97(4), pages 905-920.
    13. Wenjiang J. Fu, 2003. "Penalized Estimating Equations," Biometrics, The International Biometric Society, vol. 59(1), pages 126-132, March.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Kai Yang & Xue Ding & Xiaohui Yuan, 2022. "Bayesian empirical likelihood inference and order shrinkage for autoregressive models," Statistical Papers, Springer, vol. 63(1), pages 97-121, February.
    2. Fang, Jianglin, 2023. "A split-and-conquer variable selection approach for high-dimensional general semiparametric models with massive data," Journal of Multivariate Analysis, Elsevier, vol. 194(C).
    3. Bedoui, Adel & Lazar, Nicole A., 2020. "Bayesian empirical likelihood for ridge and lasso regressions," Computational Statistics & Data Analysis, Elsevier, vol. 145(C).
    4. Siddharta Chib & Minchul Shin & Anna Simoni, 2016. "Bayesian Empirical Likelihood Estimation and Comparison of Moment Condition Models," Working Papers 2016-21, Center for Research in Economics and Statistics.
    5. Mahdieh Bayati & Seyed Kamran Ghoreishi & Jingjing Wu, 2021. "Bayesian analysis of restricted penalized empirical likelihood," Computational Statistics, Springer, vol. 36(2), pages 1321-1339, June.
    6. Hong Guo & Changliang Zou & Zhaojun Wang & Bin Chen, 2014. "Empirical likelihood for high-dimensional linear regression models," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 77(7), pages 921-945, October.
    7. Lu Tang & Peter X.‐K. Song, 2021. "Poststratification fusion learning in longitudinal data analysis," Biometrics, The International Biometric Society, vol. 77(3), pages 914-928, September.
    8. Li, Cheng & Jiang, Wenxin, 2016. "On oracle property and asymptotic validity of Bayesian generalized method of moments," Journal of Multivariate Analysis, Elsevier, vol. 145(C), pages 132-147.
    9. Chang, Jinyuan & Chen, Song Xi & Chen, Xiaohong, 2015. "High dimensional generalized empirical likelihood for moment restrictions with dependent data," Journal of Econometrics, Elsevier, vol. 185(1), pages 283-304.
    10. Gregory Vaughan & Robert Aseltine & Kun Chen & Jun Yan, 2017. "Stagewise generalized estimating equations with grouped variables," Biometrics, The International Biometric Society, vol. 73(4), pages 1332-1342, December.
    11. Zhang, Jia & Shi, Haoming & Tian, Lemeng & Xiao, Fengjun, 2019. "Penalized generalized empirical likelihood in high-dimensional weakly dependent data," Journal of Multivariate Analysis, Elsevier, vol. 171(C), pages 270-283.
    12. Xia Chen & Liyue Mao, 2020. "Penalized empirical likelihood for partially linear errors-in-variables models," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 104(4), pages 597-623, December.
    13. Fan, Guo-Liang & Liang, Han-Ying & Shen, Yu, 2016. "Penalized empirical likelihood for high-dimensional partially linear varying coefficient model with measurement errors," Journal of Multivariate Analysis, Elsevier, vol. 147(C), pages 183-201.
    14. Francesco Bravo, "undated". "Empirical likelihood specification testing in linear regression models," Discussion Papers 00/28, Department of Economics, University of York.
    15. Sanjay Chaudhuri & Debashis Mondal & Teng Yin, 2017. "Hamiltonian Monte Carlo sampling in Bayesian empirical likelihood computation," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 79(1), pages 293-320, January.
    16. Li, Gaorong & Lian, Heng & Feng, Sanying & Zhu, Lixing, 2013. "Automatic variable selection for longitudinal generalized linear models," Computational Statistics & Data Analysis, Elsevier, vol. 61(C), pages 174-186.
    17. Liang, Hua & Su, Haiyan & Zou, Guohua, 2008. "Confidence intervals for a common mean with missing data with applications in an AIDS study," Computational Statistics & Data Analysis, Elsevier, vol. 53(2), pages 546-553, December.
    18. Feng, Sanying & Lian, Heng & Zhu, Fukang, 2016. "Reduced rank regression with possibly non-smooth criterion functions: An empirical likelihood approach," Computational Statistics & Data Analysis, Elsevier, vol. 103(C), pages 139-150.
    19. Vexler, Albert & Zou, Li & Hutson, Alan D., 2019. "The empirical likelihood prior applied to bias reduction of general estimating equations," Computational Statistics & Data Analysis, Elsevier, vol. 138(C), pages 96-106.
    20. Mike G. Tsionas, 2023. "Linex and double-linex regression for parameter estimation and forecasting," Annals of Operations Research, Springer, vol. 323(1), pages 229-245, April.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:187:y:2023:i:c:s0167947323000968. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.