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Degrees of freedom and model selection for k-means clustering

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  • Hofmeyr, David P.

Abstract

A thorough investigation into the model degrees of freedom in k-means clustering is conducted. An extension of Stein’s lemma is used to obtain an expression for the effective degrees of freedom in the k-means model. Approximating the degrees of freedom in practice requires simplifications of this expression, however empirical studies evince the appropriateness of the proposed approach. The practical relevance of this new degrees of freedom formulation for k-means is demonstrated through model selection using the Bayesian Information Criterion. The reliability of this method is then validated through experiments on simulated data as well as on a large collection of publicly available benchmark data sets from diverse application areas. Comparisons with popular existing techniques indicate that this approach is extremely competitive for selecting high quality clustering solutions.

Suggested Citation

  • Hofmeyr, David P., 2020. "Degrees of freedom and model selection for k-means clustering," Computational Statistics & Data Analysis, Elsevier, vol. 149(C).
  • Handle: RePEc:eee:csdana:v:149:y:2020:i:c:s0167947320300657
    DOI: 10.1016/j.csda.2020.106974
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    References listed on IDEAS

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    1. Robert Tibshirani & Guenther Walther & Trevor Hastie, 2001. "Estimating the number of clusters in a data set via the gap statistic," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 63(2), pages 411-423.
    2. Sugar, Catherine A. & James, Gareth M., 2003. "Finding the Number of Clusters in a Dataset: An Information-Theoretic Approach," Journal of the American Statistical Association, American Statistical Association, vol. 98, pages 750-763, January.
    3. Lawrence Hubert & Phipps Arabie, 1985. "Comparing partitions," Journal of Classification, Springer;The Classification Society, vol. 2(1), pages 193-218, December.
    4. Celeux, Gilles & Govaert, Gerard, 1992. "A classification EM algorithm for clustering and two stochastic versions," Computational Statistics & Data Analysis, Elsevier, vol. 14(3), pages 315-332, October.
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    Cited by:

    1. Motegi, Ryosuke & Seki, Yoichi, 2023. "SMLSOM: The shrinking maximum likelihood self-organizing map," Computational Statistics & Data Analysis, Elsevier, vol. 182(C).

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