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Bayesian modeling of multiple structural connectivity networks during the progression of Alzheimer's disease

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  • Christine B. Peterson
  • Nathan Osborne
  • Francesco C. Stingo
  • Pierrick Bourgeat
  • James D. Doecke
  • Marina Vannucci

Abstract

Alzheimer's disease is the most common neurodegenerative disease. The aim of this study is to infer structural changes in brain connectivity resulting from disease progression using cortical thickness measurements from a cohort of participants who were either healthy control, or with mild cognitive impairment, or Alzheimer's disease patients. For this purpose, we develop a novel approach for inference of multiple networks with related edge values across groups. Specifically, we infer a Gaussian graphical model for each group within a joint framework, where we rely on Bayesian hierarchical priors to link the precision matrix entries across groups. Our proposal differs from existing approaches in that it flexibly learns which groups have the most similar edge values, and accounts for the strength of connection (rather than only edge presence or absence) when sharing information across groups. Our results identify key alterations in structural connectivity that may reflect disruptions to the healthy brain, such as decreased connectivity within the occipital lobe with increasing disease severity. We also illustrate the proposed method through simulations, where we demonstrate its performance in structure learning and precision matrix estimation with respect to alternative approaches.

Suggested Citation

  • Christine B. Peterson & Nathan Osborne & Francesco C. Stingo & Pierrick Bourgeat & James D. Doecke & Marina Vannucci, 2020. "Bayesian modeling of multiple structural connectivity networks during the progression of Alzheimer's disease," Biometrics, The International Biometric Society, vol. 76(4), pages 1120-1132, December.
  • Handle: RePEc:bla:biomet:v:76:y:2020:i:4:p:1120-1132
    DOI: 10.1111/biom.13235
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    References listed on IDEAS

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    1. Jian Guo & Elizaveta Levina & George Michailidis & Ji Zhu, 2011. "Joint estimation of multiple graphical models," Biometrika, Biometrika Trust, vol. 98(1), pages 1-15.
    2. Emma Pierson & the GTEx Consortium & Daphne Koller & Alexis Battle & Sara Mostafavi, 2015. "Sharing and Specificity of Co-expression Networks across 35 Human Tissues," PLOS Computational Biology, Public Library of Science, vol. 11(5), pages 1-19, May.
    3. Patrick Danaher & Pei Wang & Daniela M. Witten, 2014. "The joint graphical lasso for inverse covariance estimation across multiple classes," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 76(2), pages 373-397, March.
    4. Elin Shaddox & Francesco C. Stingo & Christine B. Peterson & Sean Jacobson & Charmion Cruickshank-Quinn & Katerina Kechris & Russell Bowler & Marina Vannucci, 2018. "A Bayesian Approach for Learning Gene Networks Underlying Disease Severity in COPD," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 10(1), pages 59-85, April.
    5. Christine Peterson & Francesco C. Stingo & Marina Vannucci, 2015. "Bayesian Inference of Multiple Gaussian Graphical Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(509), pages 159-174, March.
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    Cited by:

    1. Lee, Kyoungjae & Cao, Xuan, 2022. "Bayesian joint inference for multiple directed acyclic graphs," Journal of Multivariate Analysis, Elsevier, vol. 191(C).
    2. Yang Ni & Veerabhadran Baladandayuthapani & Marina Vannucci & Francesco C. Stingo, 2022. "Bayesian graphical models for modern biological applications," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 31(2), pages 197-225, June.

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