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The group exponential lasso for bi‐level variable selection

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  • Patrick Breheny

Abstract

In many applications, covariates possess a grouping structure that can be incorporated into the analysis to select important groups as well as important members of those groups. One important example arises in genetic association studies, where genes may have several variants capable of contributing to disease. An ideal penalized regression approach would select variables by balancing both the direct evidence of a feature's importance as well as the indirect evidence offered by the grouping structure. This work proposes a new approach we call the group exponential lasso (GEL) which features a decay parameter controlling the degree to which feature selection is coupled together within groups. We demonstrate that the GEL has a number of statistical and computational advantages over previously proposed group penalties such as the group lasso, group bridge, and composite MCP. Finally, we apply these methods to the problem of detecting rare variants in a genetic association study.

Suggested Citation

  • Patrick Breheny, 2015. "The group exponential lasso for bi‐level variable selection," Biometrics, The International Biometric Society, vol. 71(3), pages 731-740, September.
  • Handle: RePEc:bla:biomet:v:71:y:2015:i:3:p:731-740
    DOI: 10.1111/biom.12300
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    References listed on IDEAS

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    1. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
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    4. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
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    3. Bin Luo & Xiaoli Gao, 2022. "A high-dimensional M-estimator framework for bi-level variable selection," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 74(3), pages 559-579, June.
    4. Qiu, Debin & Ahn, Jeongyoun, 2020. "Grouped variable screening for ultra-high dimensional data for linear model," Computational Statistics & Data Analysis, Elsevier, vol. 144(C).
    5. Sunghoon Kwon & Jeongyoun Ahn & Woncheol Jang & Sangin Lee & Yongdai Kim, 2017. "A doubly sparse approach for group variable selection," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 69(5), pages 997-1025, October.
    6. Mallick, Himel & Yi, Nengjun, 2017. "Bayesian group bridge for bi-level variable selection," Computational Statistics & Data Analysis, Elsevier, vol. 110(C), pages 115-133.
    7. Yanxin Wang & Qibin Fan & Li Zhu, 2018. "Variable selection and estimation using a continuous approximation to the $$L_0$$ L 0 penalty," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 70(1), pages 191-214, February.
    8. Wenyan Zhong & Xuewen Lu & Jingjing Wu, 2021. "Bi-level variable selection in semiparametric transformation models with right-censored data," Computational Statistics, Springer, vol. 36(3), pages 1661-1692, September.
    9. Huang Hailin & Shangguan Jizi & Ruan Peifeng & Liang Hua, 2019. "Bi-level feature selection in high dimensional AFT models with applications to a genomic study," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 18(5), pages 1-11, October.
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    12. Liu, Jicai & Si, Yuefeng & Niu, Yong & Zhang, Riquan, 2022. "Projection quantile correlation and its use in high-dimensional grouped variable screening," Computational Statistics & Data Analysis, Elsevier, vol. 167(C).

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